Picosynechococcus sp. PCC 73109: AWQ23_13195
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Entry
AWQ23_13195 CDS
T05693
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
syv
Picosynechococcus sp. PCC 73109
Pathway
syv03030
DNA replication
syv03410
Base excision repair
syv03420
Nucleotide excision repair
syv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
syv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AWQ23_13195 (ligA)
03410 Base excision repair
AWQ23_13195 (ligA)
03420 Nucleotide excision repair
AWQ23_13195 (ligA)
03430 Mismatch repair
AWQ23_13195 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syv03032
]
AWQ23_13195 (ligA)
03400 DNA repair and recombination proteins [BR:
syv03400
]
AWQ23_13195 (ligA)
Enzymes [BR:
syv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AWQ23_13195 (ligA)
DNA replication proteins [BR:
syv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AWQ23_13195 (ligA)
DNA repair and recombination proteins [BR:
syv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AWQ23_13195 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AWQ23_13195 (ligA)
MMR (mismatch excision repair)
DNA ligase
AWQ23_13195 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AWQ23_13195 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH_3
HHH
BRCT_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AMA10198
LinkDB
All DBs
Position
2782171..2784192
Genome browser
AA seq
673 aa
AA seq
DB search
MSDAPQTRLAQLRSQLQKAAYAYYVLDAPFMEDAVYDQLYRELVALETEYPELITPDSPS
QRIGDQPATQFTSVKHNIPLYSLENAFDFGELTQWEQRWQRALAGEIPSHSGYVCELKID
GSAIALTYENGILVRGATRGDGVTGEEITQNLRTIRTIPLRLNLDNPPPLVEVRGEAFLP
LETFEKINQEREKTGENLFANPRNAAAGTLRQLDSRIVAARKLDFFAYTLHLPESHKSPQ
LNSQWEALEFLKKMGFRVNPNRELCPNLTAVKNYFEKWDEGRKKLPYLTDGVVVKLNDFS
LQAELGFTQKFPRWAIALKYAAEEAPTTVKDIIVNVGRTGAVTPMAVMEPVQLAGTTVQR
ATLHNEDRIKELDLRIGDTVVIRKAGEIIPEVLRVLVDLRPEATIPYEFPSHCPECNSAL
VRPPGEAIARCVNSSCPAILRGSLVHWAGRDALDIQGLGEKNVILLIEHGLVQSIADIYD
LTSEQLQSLPRMGQKSAANLIQAIAHSKDQDYARVLYGLGIRFVGKVNAEILAQNFPTLE
QLQKASFAQLQGVYGIGEEIAQSVIDWFRVDANQQLIEKLQQAGLTFTQTQTTQTQVNHQ
ISGKTFVITGTLPTLKRTEAAEKIKAAGGKVTGSVSKNTDYLVAGENAGSKLDKARQLGI
QELNENQLLELLV
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgccccccaaacccgcctggcccaactgcgatcgcaactgcaaaaagcggcg
tatgcttactatgtccttgatgcaccgttcatggaggatgctgtctatgaccagctctat
cgggaactggtggccctggaaacggaatatcccgaactcattacccccgacagtcctagc
caacggattggcgaccagcccgccacccaattcaccagcgtcaaacataatatccccctc
tacagtctggaaaatgcctttgactttggggaactgacccagtgggaacaacggtggcag
cgggcgttggccggagaaatccccagccactccggttatgtgtgcgaacttaaaatcgat
ggctcggcgatcgccttaacctacgaaaacggcattttagtgcgcggagccaccaggggc
gacggtgtgacaggggaagaaatcacccaaaatctgcgtaccattcgtaccattcccttg
cgtttaaacctcgacaatccgccccctttagtggaggtgcggggggaagcctttttaccc
ttagagacctttgaaaagattaaccaagagcgggaaaaaacgggcgaaaatctatttgct
aatccgcgaaatgccgccgctggtactctacgacaacttgattcccggattgttgcggcc
cggaagttagacttttttgcctacaccctccacctcccagaatcgcacaaatcccctcag
ttaaacagccaatgggaagccctcgaatttctgaaaaaaatgggatttcgggtgaatcca
aaccgtgagctttgtcctaatttaactgccgtaaaaaattattttgaaaaatgggatgaa
ggccgcaaaaaactcccttacctgaccgatggggttgtcgttaaactcaatgacttttcc
ctccaggctgagttgggcttcacccaaaaatttccccgctgggcgatcgccttgaaatat
gccgccgaggaagcccccaccaccgtcaaagatattatcgtcaacgtgggcagaacgggg
gctgtcactcccatggccgtcatggaaccggtgcaattagccggaacgacggtacaacgg
gccaccctccacaacgaagaccgcattaaagaattagatcttagaatcggtgatacggtc
gtcattcgcaaagcaggggaaattatcccggaagttttgcgagttttagttgatttacgc
ccagaagcaactattccttacgaatttccaagccattgtcccgaatgcaactcagcctta
gtacgtccccctggggaagccatcgcccgctgtgtgaatagttcttgtccggcgattttg
cggggttccctcgtccattgggctggccgcgacgcccttgatatccagggtttaggcgaa
aaaaatgtgattctcttgatcgagcatggtctggtgcaatccatcgccgacatttatgac
ctaaccagcgaacagttgcagtctctcccccgtatggggcaaaagtcagcggcaaatttg
atccaggcgatcgcccactcaaaagatcaagactatgcccgtgttttgtatggtctgggg
attcgctttgtggggaaagtcaatgcggaaattttggcgcaaaacttcccaactttagaa
caactccaaaaagccagcttcgcccaattacagggggtttatggtattggcgaagaaatt
gcccagtccgtcatcgattggtttcgggtagatgcgaatcaacaattgatcgaaaagctg
caacaagcgggcttgacctttacccaaacccagacgacccaaacccaagtcaaccatcag
atttccggtaaaacctttgtgatcacagggacattaccgaccctcaagcgcaccgaagct
gccgaaaaaatcaaagctgccggcggcaaagttacaggttctgtgagcaaaaatactgac
tatcttgtggcaggcgaaaatgccggatctaagctagacaaagcccggcaattggggatt
caagaactgaatgaaaaccagcttttagagttgttggtatag
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