Shewanella zhangzhouensis: K0H63_08095
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Entry
K0H63_08095 CDS
T09194
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
szh
Shewanella zhangzhouensis
Pathway
szh03030
DNA replication
szh03410
Base excision repair
szh03420
Nucleotide excision repair
szh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
szh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K0H63_08095 (ligA)
03410 Base excision repair
K0H63_08095 (ligA)
03420 Nucleotide excision repair
K0H63_08095 (ligA)
03430 Mismatch repair
K0H63_08095 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
szh03032
]
K0H63_08095 (ligA)
03400 DNA repair and recombination proteins [BR:
szh03400
]
K0H63_08095 (ligA)
Enzymes [BR:
szh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K0H63_08095 (ligA)
DNA replication proteins [BR:
szh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K0H63_08095 (ligA)
DNA repair and recombination proteins [BR:
szh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K0H63_08095 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K0H63_08095 (ligA)
MMR (mismatch excision repair)
DNA ligase
K0H63_08095 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K0H63_08095 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DZR_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QYK06758
LinkDB
All DBs
Position
1885693..1887738
Genome browser
AA seq
681 aa
AA seq
DB search
MSGPAHFQGTIMQVKAEIQRLTAEINRHNIAYYVQDAPSIPDAEYDRLMNQLKALEAEHP
EFAEPDSPTQRVGGAALNKFEQVSHLKPMLSLDNAFNEEDFVAFDKRLTDKVGPQVYCAE
PKLDGLAVSLIYRHGVLERAATRGDGAVGEDISVNMRTIKSVPLRLQGDDIPALVEVRGE
VFMPRAAFEALNDRARARGDKLFVNPRNAAAGSLRQLDSKITAERSLAFYAYALGVVQDD
NGTDLVLAPTHKGQLERLTAFGLPVSKEVKLCEGLAEVMAYYADILKRRDELAFEIDGVV
IKVNNIEAQQQLGFVARAPRWAIAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV
GGVTVSNATLHNGDEIARLGVKIGDTVIIRRAGDVIPQIVAVVAERRPENAQDILFPDTC
PVCGSLVERIEGEAVARCSGGLFCEAQRREAIKHFASRKAMYIDGMGDKVVEQLIDKELV
ESPADLFKLNVSKLTMLERMGTKSATNLMAAIEEAKTTTLPKFLYALGIREVGEATAANL
AKHFLSLDAIRVADVDALMQVEDVGTVVAQHVAHFFAQPHNLEVIDALINAGVNWPAIEK
PSADAQPLLGQTWVLTGTLTSLGRTEAKAKLEALGAKVAGSVSKNTHCVVAGEAAGSKLA
KAQELGIPVLDEAGLIELVGL
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgagcggccccgcgcatttccaaggtaccatcatgcaagttaaagccgaaattcaacgt
cttaccgctgaaatcaatcgtcacaacattgcctactatgtgcaggatgcgccaagtatt
cccgatgcggaatacgaccggctgatgaaccagctcaaagcgctggaagccgagcacccg
gagtttgccgagccagactcgcccacccagcgtgtgggcggcgcggcactgaataaattt
gagcaggtcagccacctcaaacccatgctgagcctggataacgccttcaatgaagaagac
tttgttgcctttgataagcgcctgaccgacaaggtgggtccccaggtgtactgcgccgag
cccaaactcgatggcctcgcagtgagcctgatttatcgtcatggcgtgcttgagcgtgcc
gctacccgtggcgatggcgccgtcggggaagatatcagcgtgaatatgcgcaccatcaag
tcggtgcccttgagactgcagggcgatgatataccggcattggttgaagtgcgtggcgag
gtctttatgccaagggctgcctttgaagcgctgaacgaccgcgcccgggcaagaggtgac
aagctgttcgtcaatccccgcaatgccgccgccggcagcctgcgtcagctggacagcaag
ataaccgccgagcgctcactggccttttatgcctacgccctgggcgtagtgcaggacgac
aacggtaccgatttggtgctggcgcccacccacaaaggccagctggagcgccttacagcc
ttcggtttgccggtgagcaaggaagtgaaactctgtgaaggccttgccgaggtgatggcc
tactacgccgacatcctcaagcgacgtgacgagcttgcctttgaaatcgatggcgtggtt
atcaaggttaacaacatcgaagcccagcagcagctcgggtttgtggcccgagcgccgcgt
tgggccattgcctttaagtttccggcacaggaagaaatgaccttgctggaaggcgttgat
tttcaggtgggccgcactggcgccgtcactcctgtcgcccgcttaaaacctgtctttgtg
ggcggcgtgaccgtatccaacgcgactttgcacaatggcgatgaaattgcccgtcttggg
gtgaagattggcgataccgtgattattcgccgcgccggagatgtgatcccgcaaattgtg
gccgtggtggcggagcgccgccccgagaatgcgcaggatatcctgttccccgatacttgc
cccgtgtgtggctctttggtggagcggattgaaggcgaggctgtggcacgctgcagtggc
gggcttttctgtgaagcccagcgccgtgaggccatcaagcactttgcctcccgcaaggcc
atgtatatcgatggcatgggtgacaaggtggttgagcaacttatcgataaagagctggtg
gaaagcccggcggatctgttcaagctcaatgtgtccaagctgaccatgcttgagcgtatg
ggcaccaagtcggccaccaatctgatggcggccattgaagaggccaaaaccaccaccttg
cccaagtttttgtatgcactgggtattcgggaagtaggggaggccacagccgctaacctg
gcgaaacatttcctgagcctggatgctataagggtggccgatgtggacgccctgatgcag
gtggaggatgtgggcacagtggttgctcagcacgtggcgcacttttttgcccagccccat
aaccttgaggtaatagatgcgctgatcaatgctggcgtgaactggcctgccatcgaaaag
ccatcggccgatgcacagccgctgcttggccaaacctgggtgctcacgggtaccctcacc
agtcttggccgcaccgaggccaaggccaagcttgaggcccttggcgccaaggtggcgggc
agtgtctccaagaacacccactgcgtggttgccggtgaagcagcgggctccaagcttgcc
aaggcccaggaactgggtatcccggttttggatgaagctggtctgattgagcttgtaggt
ctctga
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