Shinella zoogloeoides: K8M09_10410
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Entry
K8M09_10410 CDS
T07727
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
szo
Shinella zoogloeoides
Pathway
szo03030
DNA replication
szo03410
Base excision repair
szo03420
Nucleotide excision repair
szo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
szo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K8M09_10410 (ligA)
03410 Base excision repair
K8M09_10410 (ligA)
03420 Nucleotide excision repair
K8M09_10410 (ligA)
03430 Mismatch repair
K8M09_10410 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
szo03032
]
K8M09_10410 (ligA)
03400 DNA repair and recombination proteins [BR:
szo03400
]
K8M09_10410 (ligA)
Enzymes [BR:
szo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K8M09_10410 (ligA)
DNA replication proteins [BR:
szo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K8M09_10410 (ligA)
DNA repair and recombination proteins [BR:
szo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K8M09_10410 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K8M09_10410 (ligA)
MMR (mismatch excision repair)
DNA ligase
K8M09_10410 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K8M09_10410 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
MutL
Motif
Other DBs
NCBI-ProteinID:
UEX80044
LinkDB
All DBs
Position
complement(2077077..2079236)
Genome browser
AA seq
719 aa
AA seq
DB search
MANAKTPVEILTEEEAAAELAFLAAEIARNDELYHGQDAPEISDADYDALKRRNEEIEAR
FPALVRDDSPSRRVGSAPLPTFAPITHSRPMLSLDNTFSDEDVRDFVASVYRFLGRLPDD
SIAFTAEPKIDGLSMSIRYENGRLVSAATRGDGTTGENVTANVLTIDEIPSRLPAGAPAV
VEVRGEVYMAKSDFLALNEKMAAEGKQTYVNPRNTAAGSLRQLDASVTASRKLRFFAYAW
GEMSEMPADTQFGMIGVLKGWGFPVNPMTQRLSRVEEIIAHYREIGLARPDLDYDIDGVV
YKVDELALQERLGFRSRSPRWATAHKFPAEQAFTTVEKIDIQVGRTGALTPVARLTPVTV
GGVVVTNATLHNADYIEGIGNSGERIREEGHDIRIGDTVIVQRAGDVIPQVLDVVMEKRP
AGSVSYEFPKTCPVCESHAVRERNEKTGRLDSVTRCTGGFVCRAQAVEHLKHFVSRNAFD
IEGLGSKQIDFFFEAEDASLAIRTAPDIFTLEKRQAASLTRLENIDGFGKVSVRKLYDAI
DARRSIALNRFIYALGIRHVGETNAKLLARAYGTYAAFEEAMKASAPLSGEAWSELNSID
GIGEVVARAMVEFYKEPRNLDVIGRLLEEVTPQAAEAIVASSSPVAGKTVVFTGSLEKMT
RDEAKAMAERLGAKVAGSVSKKTDLVVAGPGAGSKLDKAREFSVEVIDEDGWFELIKGS
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgcgaaaacccccgtcgaaatcctgaccgaagaagaggccgcggccgagctt
gcctttctggcggcggagattgcgcgcaatgacgaactctatcacggtcaggatgccccc
gagatttcggatgccgactacgacgcgctgaagcgccgcaacgaggagatcgaggcgcgt
tttcccgcgctggtgcgcgatgacagtccgtcacgccgcgtcggctccgcgccgctgccg
accttcgcgccgatcacccattcccggccgatgctgtcgctcgacaataccttttccgac
gaggacgtgcgcgacttcgtcgcctccgtctaccgcttcctcggccgcctgccggacgat
tccatcgcgtttaccgccgagccgaagatcgacggcctttccatgtcgatccgctacgag
aacggccgccttgtcagtgctgcgacgcgcggcgacggcacgacgggcgagaacgtcacc
gccaatgtcctgaccatcgacgaaatcccgagccgccttccggccggcgcgccggccgtc
gtggaggtgcgcggcgaggtctacatggccaagagcgattttttggcgctcaacgagaag
atggcggcggaaggcaagcagacctatgtcaacccgcgcaacacggcggccggttcgctg
cgccagctcgacgcctcggtgacggcgagccgcaagctgcgcttcttcgcctatgcctgg
ggcgagatgtcggagatgccggccgatacgcagttcggcatgatcggcgtgctgaaaggc
tggggcttcccggtcaacccgatgacgcagcggctttcgcgcgtcgaggagatcatcgca
cattaccgcgagatcggccttgcccggccggacctcgactacgatatcgacggcgtcgtc
tacaaggtcgacgaactggcgcttcaggaacgcctcggcttccgttcccgctcgccgcgc
tgggcgacggcgcacaagttcccggccgagcaggccttcaccacggtcgagaagatcgac
atccaggtcggccgcaccggcgcgctgacgcccgtcgcgcggctgacgcccgtcacggtc
ggcggcgtggtcgtcaccaatgcgaccctgcacaatgccgattacatcgagggcatcggc
aatagcggcgagcgcatccgcgaagaggggcacgatatccgcatcggcgataccgtgatt
gtgcagcgcgcgggcgacgtgatcccgcaggtgctggatgtcgtgatggaaaagcggccg
gcgggatcggtgtcctacgaattcccgaagacctgcccggtctgcgagagccatgccgtg
cgcgagcgcaacgaaaagacgggccggctcgattccgtcacccgctgcacgggcggcttc
gtctgccgcgcgcaggcggtggagcacctgaagcatttcgtctcgcgcaacgccttcgat
atcgaaggattgggctccaagcagatcgatttcttcttcgaggcggaagatgcgtctctc
gcgatccgcaccgcgcccgatatcttcacgctagagaagcggcaggcggcgtccctgacc
cggctggaaaatatcgacggcttcggcaaggtgagcgtgcgcaaactctacgacgccatc
gacgcccgccgctccatcgcgctcaaccgcttcatctatgcgctcggtatccgccatgtc
ggcgagaccaatgcgaagctgctggcgcgcgcttacggcacctacgccgccttcgaggag
gcgatgaaggcgtccgcgccgctttccggtgaggcatggagcgaactcaacagcatcgac
ggcatcggcgaggtcgtcgcccgcgccatggtcgagttctacaaggagccccgcaatctc
gatgtgatcggccggctgctggaggaggtgacgccgcaggccgccgaggcaatcgtcgca
tcgtccagcccggttgcgggcaagacggtggtcttcaccggatcgctggagaagatgaca
cgcgacgaggccaaggccatggccgagcggctgggcgcgaaggtggcggggtccgtgtcg
aagaagaccgacctcgttgtcgccggtcccggggccggctccaagctcgacaaggcgcgc
gaattcagcgtcgaggtgatcgacgaggacggctggttcgaactgatcaagggatcgtga
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