Triticum aestivum (bread wheat): 123113651
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Entry
123113651 CDS
T07757
Name
(RefSeq) 5'-3' exoribonuclease 4-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
123113651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123113651
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
123113651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Frigida
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
123113651
NCBI-ProteinID:
XP_044390889
LinkDB
All DBs
Position
5B:614475717..614490368
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AA seq
1325 aa
AA seq
DB search
MGVPAFYRWLADRYPQTVSDAEEEEPVELEPGAFVPVDPRRPNPNGHEFDNLYLDMNGII
HPCFHPEGRPSPTTYDEVFKSIFDYIDHLFCLVRPRKILYMAIDGVAPRAKMNQQRSRRF
RAAKDAADAAAEEERLRLEFEAEGRNLVRKEKSEAIDSNVITPGTPFMFVLSSALQYYIQ
LRLNHSPGWQSVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHVLYGLDADLIML
ALATHEVHFSILREVITMPGQHEKCFLCGQVGHLAAECQGPGPADNVVELPPIHKKKYQF
LNIWVLREYLEKDLEIVDPPFKINLERILDDFVFLCFFVGNDFLPHMPTLEIREGAINLL
MNIYRAEFKPMGGYLTDGGEVLLERVEHFIQAVAIHEEQIFRKRARIQKAYENNEDRRRA
QGENSEENQYVDMVKLGEPGFRERYYAEKFREEAESKPIDQVQRDVVQKYAEGLCWVMRY
YYQGVCSWQWFYPYHYAPFASDLKNLTEFEITFFLGQPFKPFDQLMGTLPAASSNALPKH
YGDLMTDPNSPLNYFYPKDFEIDMNGKRFAWQGIAKLPFIDERRLLAETQKLEDTLTEEE
RFRNTTMFDIIYVRETHPLAAQIAFLHQMYSQQMITDPSYCIPIDPAASGGMNGFLCLSQ
RNWYSISVGSPVKGFNGITNNRVLNATYVNPQYHKHIPEPPEGAIIPPKILKPYDFKPFP
VLWHEDNSRRQTRDRPQVHGALTGSVLGEAAHRLLKNSLQIKSGSSAGLLHVPYGAAPYG
PGNRARPSGPLGYERGFVDNPYHAHMSRSAPNPRPQFFGEAQPNRQNVRILERPNNRNHD
GGIHSGMSKMTIQDGPRMHQNPRMQSPGYFPNQPYPNQYGGFPPQRPMQNASFTPQLPFQ
NAPFPQQRPVQNAGFAQQRPVHNAGFAQQRPVQNAGFMQQQQPVNGVPPPLPPSTWIGKQ
PSGGQAGTPARQQDPRTNRQPKQDNRQPRQDNLRSQHESRQQAAKVVYRSDQASVTHHRA
SVGALPTSAPHVATFAVAEKEDKELYKRIVLSFSWRRQMPRLALTLGLEDDMEEIIEELI
TKGQQLDAVNFAYEAGLLEKFSPVPLLKSYLEDSKKIYCISDNVSTSSGQSGVNANKKEQ
SVLRAVIKCVEDHKLEAEFPLEDLRKRLEELEMAKTEKKKAASSCSSGGPASKRIKGSAG
GAMSPSKAGRPSDNTGAPSSPATATSSSSTTAFIGSPASHVSYGTGSPYSYDRSAGHALY
CGQSPLPMREPYAYPPAVPVPNVGLGMPYQAPPMTYPIYAGYNSGLGAYGNAMPPAPAFH
QAYYR
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgttctacaggtggttggcggaccggtacccccagacggtgtcggac
gcggaggaggaggagcccgtggagctcgagcccggggccttcgtccccgtcgacccccgc
cgccccaaccccaacggccacgagttcgacaacctctacctcgacatgaacggcatcatc
cacccctgcttccaccccgagggccggccctccccgaccacctacgacgaggtgttcaag
tcgatttttgactacatcgaccacctcttctgcctcgtccgccctaggaagatcctctac
atggcgatcgacggtgttgcgccgagggccaagatgaatcagcagcggtccaggcggttc
cgggctgcgaaggatgctgctgatgcggcggccgaggaggaaaggctgaggctggaattc
gaggcagaggggaggaatttggtccggaaggagaagtcggaggcgatcgactcgaatgtc
ataactcccgggacaccgttcatgtttgtgctctcttcggcgcttcagtactacatacag
ttgagattgaatcactcccctgggtggcagtctgtcaaggtaatattgtctgactcaaat
gttcctggagagggggaacataagatcatgtcatatatccgtctgcagcgcaatcttcca
gggtttgaccccaacacacgccatgtcttatatggccttgatgctgatttgatcatgctt
gctctggcaactcatgaggtccacttctcaattttaagagaggtgatcaccatgccaggg
caacatgaaaaatgcttcctgtgtggtcaagttgggcatttggctgctgagtgccaaggc
cctggtccggctgataatgtcgtggagctccctccaattcataaaaagaagtaccagttt
cttaacatctgggtgctgcgggaatacctggagaaggatttggagattgtagatcccccc
ttcaagataaaccttgaacgcatcttggatgattttgtgtttctctgcttctttgttggg
aatgactttctgccacacatgccgactttggaaattcgtgagggtgccattaatcttctg
atgaatatttatagagcagagttcaaaccaatgggcggttacctcactgatgggggtgag
gttttactagaacgagtggagcatttcattcaggctgttgctatccatgaagaacaaatt
ttccggaagcgtgcacgtattcagaaggcgtacgagaacaacgaggatagacgtagagcg
cagggagagaactccgaggaaaatcaatatgtggacatggttaaactaggagagccagga
ttcagggagaggtactatgctgagaaatttagagaagaggcagaatcaaagcccattgat
caagttcagagagatgttgttcagaaatatgcggaaggtctttgctgggtcatgagatac
tactatcagggtgtttgttcatggcagtggttctatccataccattatgcgccttttgca
tctgacctgaaaaacttgactgagtttgagataacctttttcttgggtcaacctttcaag
ccatttgatcaactaatgggaacactgccagctgctagctctaatgcactgccaaagcac
tatggggatttgatgactgatccaaattcaccgttgaattatttctatcccaaagatttt
gaaatagacatgaacggaaagcgttttgcatggcagggtattgcgaaattgccttttatt
gatgaaaggcggttgcttgcggagacacagaaacttgaagatacattaacagaagaagag
agattcaggaatacgacaatgtttgacataatttatgtgcgggaaactcatccattggct
gctcaaattgcattcctgcatcagatgtactctcaacaaatgataacagatccttcctat
tgtatccccattgaccctgctgctagtggcggaatgaatggatttctttgtttatctcaa
agaaattggtacagcatctctgtaggatctccagttaaggggttcaatggcatcaccaat
aaccgagttttgaatgctacctatgttaaccctcagtatcacaaacacatcccggagcct
ccagagggtgccattatacctccaaagatattgaaaccttacgatttcaaacctttccct
gtgttgtggcatgaagataatagtcggcgacagacacgagacaggcctcaggtgcatgga
gctctgacaggttctgtcttgggagaggctgcacatcgtctactgaaaaattccctgcag
atcaaatctggcagctctgctgggctgcttcatgttccatacggagcagcaccctatggc
cctggaaacagagcaaggccctctggacctttgggatatgagaggggttttgtggacaat
ccataccatgcacacatgtccagaagcgctccaaatcctcggcctcagttctttggtgaa
gctcaacccaacagacagaatgtgcggatactagagcggccaaacaatcgaaaccatgat
ggtggcatccattcagggatgtcaaaaatgaccattcaagatgggccaagaatgcatcaa
aatcccaggatgcagagtcctggatattttccaaaccagccatatccgaatcagtatggt
gggttcccaccccagcggcccatgcagaacgccagttttacaccgcagctgcctttccaa
aatgcaccattcccacagcagcggcctgttcaaaatgcaggattcgcacagcagcggcct
gttcataatgcaggattcgcacagcagaggcctgttcaaaatgcaggattcatgcagcag
cagcaaccagtgaacggggtccccccaccattacctcccagcacttggatcggcaagcaa
ccaagcggaggccaggctggtacacctgccaggcagcaggacccgaggacaaacagacag
cctaagcaggataatagacagccaaggcaggataacctgagatcacagcatgagagcagg
cagcaggctgccaaggtggtataccgttctgaccaggccagcgttactcaccaccgggcg
tcggtgggggctttgcctaccagtgcgccgcacgtcgccaccttcgccgtggcggagaag
gaggacaaggagctctacaagaggatcgttctcagcttctcctggcgcaggcagatgcca
cgccttgctctcacgcttggcctcgaggatgacatggaagaaatcattgaagagcttatc
acaaaggggcaacaacttgatgccgtgaactttgcatatgaggctggtcttctggaaaaa
ttctccccagtccctcttttgaaatcctacctggaggattctaagaagatatattgcatt
tcagataacgtgagcactagcagtggccaatctggggtcaatgcaaataagaaggagcag
tctgtgcttcgggctgttataaagtgtgttgaggaccacaaactcgaagccgagtttcca
ttggaggatctgcggaaacggctggaagaattggagatggccaagaccgagaagaaaaag
gcagcctcaagctgttccagtggcggcccagcaagcaagcgcatcaaagggagcgctggg
ggagcaatgtccccttccaaggctggtcgtccaagcgacaacaccggtgcaccatcttcg
cccgccaccgccaccagcagcagcagcaccaccgcattcatcggctctccagcctcccat
gtctcctacggtaccggatctccctactcttatgataggtcagctgggcacgccctctac
tgtggccagagcccacttccaatgagggagccatatgcatacccacctgctgtgccggtg
cccaatgttggccttggaatgccataccaagcccctcccatgacctaccccatctacgcc
ggatacaacagcggcctgggagcctatggcaatgccatgcccccagccccagcctttcac
caggcttactaccggtag
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