Thermosipho africanus: THA_1772
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Entry
THA_1772 CDS
T00797
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
taf
Thermosipho africanus
Pathway
taf03030
DNA replication
taf03410
Base excision repair
taf03420
Nucleotide excision repair
taf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
taf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THA_1772 (ligA)
03410 Base excision repair
THA_1772 (ligA)
03420 Nucleotide excision repair
THA_1772 (ligA)
03430 Mismatch repair
THA_1772 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
taf03032
]
THA_1772 (ligA)
03400 DNA repair and recombination proteins [BR:
taf03400
]
THA_1772 (ligA)
Enzymes [BR:
taf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
THA_1772 (ligA)
DNA replication proteins [BR:
taf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
THA_1772 (ligA)
DNA repair and recombination proteins [BR:
taf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
THA_1772 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
THA_1772 (ligA)
MMR (mismatch excision repair)
DNA ligase
THA_1772 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
THA_1772 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
HHH_3
PTCB-BRCT
DNA_ligase_ZBD
BRCT_2
RNA_pol_A_CTD
5_3_exonuc
RNA_ligase
HHH_8
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
ACJ76203
UniProt:
B7IDX6
LinkDB
All DBs
Position
1764195..1766192
Genome browser
AA seq
665 aa
AA seq
DB search
MDKKKFKEEIEKLREEIEYHNYRYYVLADPVISDEEYDKLLKKLIELEKKYPEFYSPTSP
TQKVGGKVLDGFKKVMHSIPMLSLDNTYNEEEIKEFDERIKKLLGVNEVEYVCELKIDGI
SVALRYENGQFVTALSRGDGIEGEDISENVKKIKSIPLRLFKNLTIEVRGEIFMPVKEFE
KYNKIAEEEGLQPFANPRNATAGTIRQLDSSIVAKRNLDSFIYYVVNPEIYGLKTQWEAL
KFLKEIGFKTNPYSRLCHDVNCVIDFWKEMTKKRTQLDYWIDGLVIKVNNFEYQRKLGET
AKAPRWAIAFKFPSIKAESKILNIELNVGRTGVITPVAVLEPINLEGSIVKRASLHNFDY
IKEKDIRIGDHVYVEKAGGIIPQIVSVIKEKRTGKELEIEIPKSCPICGGKVGKISEEEV
AIRCLNPHCPQKLKRHMEIFVSKSAFNISGLGEKIVEKIVDARLINDVADIFYLTPFDLA
QISGLGQKSIANILEQIEKAKNTPLYRVIIGLGIPLVGEKTAKILADKFKSIKALSQASY
DELTSIEGIGPEVAKNIIEYFKNEKTKEIIRKLENAGVKLEQEEDTKKSSKLAGLTFVIT
GKFNSFTREEVKEIIEKLGGKVTNTVSSKTDYLLVGEKPGSKYQKALELGVKIINEDEFK
KMIID
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggataagaaaaaatttaaagaggaaattgaaaaattaagggaagaaatagaatatcac
aattacagatattatgttcttgctgatcccgtaattagtgatgaagaatacgataaactt
cttaaaaaacttatagagttagagaaaaaataccctgagttttattctcctacgtcgcca
acacaaaaagttggaggaaaagttcttgacggatttaaaaaagttatgcattcgattcct
atgttaagcttggataatacatataacgaagaagaaataaaggaatttgatgaaaggata
aaaaaattactaggggttaatgaagttgaatatgtttgtgaattaaaaattgatggtatt
tctgtagctttaagatatgaaaatggccaatttgttactgcattaagtagaggagatggc
attgaaggtgaagatatatccgaaaatgtaaaaaaaataaaatctattccacttaggtta
tttaaaaatttgacaattgaagttagaggagaaattttcatgccagtaaaagaatttgaa
aagtataacaaaattgcagaagaggagggcttacaaccctttgcaaacccaagaaatgct
actgctggaactataagacaactagattcttctatagttgctaaaagaaatcttgattct
tttatttattatgtagtaaacccagagatttatggcttaaaaactcaatgggaagcttta
aaattcttaaaagaaataggatttaaaactaatccttattcaaggttatgtcatgatgtt
aattgtgtaatagatttttggaaagaaatgaccaagaagagaacacaattagattattgg
attgatggacttgtaattaaagttaataattttgaatatcaaaggaaattgggcgaaact
gcaaaagctccaagatgggctattgctttcaaatttccttccattaaagctgaatcaaaa
attttgaatatagaacttaatgttggaagaactggagttataacacccgtagcagtttta
gaaccaattaatttagaaggttctattgttaaaagagcttctttgcataattttgattac
ataaaagaaaaggatataagaataggagatcacgtgtatgtagaaaaagctggtggtata
attcctcaaattgtaagtgttataaaagaaaagagaacgggaaaagaacttgaaattgaa
attccaaaatcatgtccaatttgtggtgggaaagttggtaaaatttcagaagaagaagtt
gctataagatgtttaaatcctcattgtccacaaaaattaaagcgacatatggaaatattt
gtttctaaatctgcatttaatataagtggcttgggagaaaaaatagttgaaaagatagta
gatgcaagattaataaatgatgtagcagatatattttatcttaccccatttgatcttgca
caaataagtggattaggtcaaaaatctattgcaaatattttagaacaaattgagaaggct
aaaaatactcctttatatagagttattattggtcttggaattccacttgtgggcgaaaaa
actgccaagatattagccgataagtttaaaagtattaaagcactttctcaagctagttat
gatgagttaacttctattgaaggaattggacctgaagttgcaaaaaatattatcgagtac
tttaaaaatgaaaagacaaaagaaataattagaaaattagaaaatgcaggtgtaaaacta
gaacaggaagaagacactaaaaagtcttctaagttagcaggcttaacatttgtaataacc
ggaaaatttaattcttttacaagggaagaagtaaaagaaattatagaaaaacttggtgga
aaagttactaatactgtttcttcaaaaacggattatctattagttggtgaaaaacctggt
tcgaaatatcaaaaagcattggaacttggtgtaaaaattataaatgaagatgaatttaaa
aaaatgattattgattag
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