Terribacillus sp. DMT04: KS242_04030
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Entry
KS242_04030 CDS
T07391
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
taid
Terribacillus sp. DMT04
Pathway
taid03030
DNA replication
taid03410
Base excision repair
taid03420
Nucleotide excision repair
taid03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
taid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KS242_04030 (ligA)
03410 Base excision repair
KS242_04030 (ligA)
03420 Nucleotide excision repair
KS242_04030 (ligA)
03430 Mismatch repair
KS242_04030 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
taid03032
]
KS242_04030 (ligA)
03400 DNA repair and recombination proteins [BR:
taid03400
]
KS242_04030 (ligA)
Enzymes [BR:
taid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KS242_04030 (ligA)
DNA replication proteins [BR:
taid03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KS242_04030 (ligA)
DNA repair and recombination proteins [BR:
taid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KS242_04030 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KS242_04030 (ligA)
MMR (mismatch excision repair)
DNA ligase
KS242_04030 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KS242_04030 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_pol_A_CTD
Zn_ribbon_NUD
Nlig-Ia
BRCT_2
HHH_3
5_3_exonuc
DUF7340
HHH_8
Motif
Other DBs
NCBI-ProteinID:
QXE02404
LinkDB
All DBs
Position
743524..745530
Genome browser
AA seq
668 aa
AA seq
DB search
MKKEEVMQELADLRKKLNQYNYDYHVLDNPQVSDYEYDQTLKRLLDIEAEFPDLVTSDSP
SQRVGGAPLEGFQKVEHRVPMLSLGNAFNEEDLRSFDKRVRNGLETEEYSYICELKIDGL
AVSLRYENGEFVQGATRGDGTTGEDITQNLRTIRSIPLRIDLEEAIEVRGEAFMPQKSFA
ALNAQKEENGEAPFANPRNAAAGSLRQLDPKIAASRNLDVFLYGSGQWETNNLDSHSGLL
DYLEQQGFKTNKERRRCEKIEEVLAFVEEWSAKRADLRYEIDGIVIKVDKREQQDELGFT
ARTPRWAIAYKFPAEEVTTKLYDIELNVGRTGVITPTALLEPVRVAGTTVQRATLHNEDL
IREKDIRIGDTVVIKKAGDIIPEVVRVVTDARTGDEQEFHMPAHCPECGSETVRLEDEVA
LRCINPSCPAQLVEGLIHFVSRNAMNIDGLGEKVIMQLYKAALVHTIDDLYKLQRDKLLD
LERMGEKSADNMLQSIEASKENSLERLLFGLGIRFVGSKAAKTLAQAFETIDRLQQATVE
ELVAIDEIGEKMADSIYQHFQEDKVIQLIEELKTVGVNMTYKGIKPQEVTADSVFTGKTI
VLTGKMEALSRPQAKEKIEALGGIVTGSVSKKTDLLIAGEDAGSKYDKAEKLGIEIWDEA
RLIEALQE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaagaagtaatgcaagagcttgctgatttgcgcaaaaagctcaatcaatat
aattatgattatcatgtgcttgataatccgcaagtgtctgattatgaatatgatcagaca
ctaaagcggcttttagacatagaagcagaatttcctgacctagttacgagtgattcgcct
tcccaacgtgtaggcggggcaccgcttgaaggttttcagaaggtggagcaccgcgtcccg
atgctttcgcttggcaatgcctttaatgaagaggatctgcgaagctttgacaagcgagtc
agaaatgggctggagacggaggagtattcgtatatatgcgaattgaaaattgacggtctt
gctgtatctctgcgctatgagaatggtgaatttgttcaaggcgcgactcgcggagacgga
acgacaggtgaagacattacccaaaatctgcggacaatccgcagcattccgcttcgaatt
gatttagaggaagcaatcgaagtgcgcggcgaagcttttatgccgcaaaaatcatttgct
gctctaaatgcacaaaaggaagaaaacggcgaagcgccgtttgcaaatccgcgtaatgca
gcggctggttctctacgtcagctagatccgaaaattgctgccagccgtaacttagatgtc
ttcttgtatggttctggtcaatgggagacaaacaatttggattcccatagcggtctgctt
gattatttggaacagcaaggctttaagacaaataaagaacgccgccgctgcgaaaagatc
gaagaagtgctagctttcgtggaagagtggagcgcgaaacgtgctgatcttcgctacgag
attgatggcattgttatcaaagtggacaagcgtgagcagcaagatgaacttggctttaca
gcacgaacaccacgctgggcaattgcatataaatttccagccgaggaagtgacaaccaag
ctgtatgatatcgagctgaacgtcggacgtactggcgttattacaccaacagcgctgctg
gagccggtccgagtagcgggcacaactgtgcagcgcgctacgttgcataacgaagatctt
attcgcgagaaagatattcgtattggcgatacagttgtcatcaaaaaagctggcgacatt
attccggaagttgtccgtgtcgtaaccgatgctcgcactggagatgagcaggaatttcat
atgccagcgcattgtccggaatgcggcagtgaaacggtccgcttggaagatgaagttgcg
ctgcgctgtatcaatccaagctgtccggcacagcttgtagaaggattgattcacttcgtt
tcccgaaatgccatgaatatcgatggcttaggtgaaaaagtcattatgcagctgtacaaa
gctgcattggtgcacacgattgatgacttgtacaaattacagcgagacaagctgctcgat
ctggagcgcatgggcgagaagtctgcggataatatgctgcaatccattgaagcatccaaa
gaaaattcactggagcgtctattgtttggattgggtatccgttttgttggatccaaggca
gctaaaacattagcacaagcttttgaaacaatcgacagactgcagcaggcaaccgtggaa
gagcttgttgcaattgatgagattggcgaaaaaatggccgattctatttatcagcatttc
caagaggataaagtaatccaattgattgaagagctgaaaacagtcggcgtaaatatgacg
tacaaaggcatcaagccgcaagaagtaacagctgatagtgtatttactggaaagacgatt
gtactgactggtaaaatggaggctctctcacgcccgcaagcgaaagagaaaatcgaagcg
ctgggcggtattgtcacaggcagtgtaagcaagaagacagatttattgattgccggtgaa
gatgctggatcaaaatatgataaagcagagaagctcgggatagagatatgggatgaagca
cgtttgatcgaagcgttacaggaatag
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