Tamlana carrageenivorans: C1A40_18010
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Entry
C1A40_18010 CDS
T05295
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
taj
Tamlana carrageenivorans
Pathway
taj03030
DNA replication
taj03410
Base excision repair
taj03420
Nucleotide excision repair
taj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
taj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C1A40_18010
03410 Base excision repair
C1A40_18010
03420 Nucleotide excision repair
C1A40_18010
03430 Mismatch repair
C1A40_18010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
taj03032
]
C1A40_18010
03400 DNA repair and recombination proteins [BR:
taj03400
]
C1A40_18010
Enzymes [BR:
taj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C1A40_18010
DNA replication proteins [BR:
taj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C1A40_18010
DNA repair and recombination proteins [BR:
taj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C1A40_18010
NER (nucleotide excision repair)
GGR (global genome repair) factors
C1A40_18010
MMR (mismatch excision repair)
DNA ligase
C1A40_18010
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C1A40_18010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
Auto_anti-p27
5_3_exonuc
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
AUS07210
UniProt:
A0A2I7SMT9
LinkDB
All DBs
Position
complement(4109879..4111879)
Genome browser
AA seq
666 aa
AA seq
DB search
MNTVEQEIKRLRDELNAYNYSYYVLDQKEISDYDFDLKLKTLQDLELKYPEFFDSNSPTQ
RVGGEVTKNFETIVHEHRMYSLDNSYSKEDLQDWENRIKKMVDGEIEYACELKYDGASIS
LTYENGVLVKAVTRGDGFQGDNVTANVKTIKSVPLRLKGDFPDKFDIRGEIILPFEGFNK
MNEERIEIGEEPYRNPRNTASGSLKLQDSAEVAKRPLECLLYNITGNNLGISSQIESLEK
ARQWGFKVPDASKLAHSIDDVLEFVNYWDINRHHLAYETDGVVIKVNSLQHQEELGFTAK
APRWAMAYKFKAEQVSTKLNSISYQVGRTGAITPVANLEPVELAGTTVKRASLHNADQIE
KLDIRVGDEVYVEKGGEIIPKILGVDLLKRVPESTPTEYITHCPECGTALVRQDGEAQHY
CPNYNGCKPQVIGRIQHYISRKAMDIDGLGGETVALLVNENLVSNYADLYELTKEQVVPL
ERMAEKSADNLIKGIEQSKNIPFERVLFALGIRYVGETVAKKLAKHYKSIDAIMTAGQEE
LVAVDEIGVKIAESVRLFFEAEENVQMVNRLKAFGVQLEMSEDQLKGQTELLKGDIIVIT
GVFEKVSRNELKKLIEDNGGKVSSSISSKTSYIVAGANMGPSKKDKAEKLGVSLISESEF
LQKIKN
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaatacagttgaacaagaaataaagcgtttgcgcgacgagttaaacgcttataattac
agttattacgttttggatcagaaggagatatcagattacgatttcgatttaaaactgaaa
acacttcaagatttagaattgaaatatccagagttttttgattcgaactcgccaacacaa
cgggtaggcggagaagtcaccaaaaattttgaaaccatagttcatgagcatcgcatgtat
tctttagataattcttattctaaagaagatttacaagattgggaaaaccggataaaaaaa
atggttgatggagagattgagtatgcttgcgaattaaaatacgatggagcttctatcagt
ttaacttatgaaaacggggtattagttaaagctgtgacgcgtggtgacggatttcaaggt
gataacgtgacggccaatgtaaaaaccataaaatcggtgcctttgcgattgaaaggtgat
tttcctgataaatttgatatccgaggagaaataattttaccttttgagggcttcaataaa
atgaatgaagagcgcattgaaataggagaggagccttatagaaacccgagaaacacggct
tcagggagtttaaagcttcaggatagtgccgaggtagctaaacgtccattagagtgttta
ctgtataatattactggaaacaatttaggtatttcttctcaaattgaaagtttagaaaaa
gcaagacagtggggatttaaagtaccagatgcgtctaaattagcacattctattgatgat
gttttagaatttgtaaactattgggatattaaccgtcatcatttagcttatgaaaccgat
ggcgtggtgatcaaagttaatagtttacagcaccaagaagagcttggttttaccgcgaag
gccccgcgctgggctatggcttataagtttaaagccgagcaagtttcaacaaaattaaac
agtattagttatcaggttggtagaacgggagcgattaccccagttgctaatttagaacct
gtagaactagccggaacaacggtaaaacgtgcttccttgcataatgccgatcaaattgaa
aaattagatataagagtaggtgatgaagtttatgttgaaaagggtggtgagatcattcca
aaaattttgggtgttgatttacttaaacgtgttccagaatctacaccaacagaatatata
acacattgtcctgaatgtggcacagccttggtgcgtcaagacggagaagctcagcattat
tgtcctaattataacggatgtaaaccacaggttattggtagaattcaacattatatatca
agaaaagcgatggatattgatggcttaggtggtgaaacagtagctttattggttaatgaa
aatttggtttcaaattatgccgatttatacgagttgactaaagaacaagtagtgcctttg
gagcgcatggctgaaaaaagtgctgacaatttgataaaaggtattgagcaatctaaaaat
attcctttcgaacgtgttttatttgctttaggtatacgttatgtcggagaaacggtggct
aaaaaattggcaaaacattacaaaagtattgatgctattatgactgctggtcaagaagaa
ttagtagctgtagatgaaataggtgtaaaaattgcagaaagtgtgcgattgttttttgag
gctgaagaaaacgtgcaaatggtaaaccgattaaaagcctttggtgttcaattagaaatg
agcgaagatcaactgaaaggtcaaacggaattgcttaaaggcgacatcattgttattact
ggggtttttgaaaaagtgtctagaaacgaacttaaaaagctaatagaagataacggcggt
aaagtgagtagttcgatttcgtctaaaacaagctatatagtagcaggtgccaatatgggg
cctagtaaaaaagataaagccgaaaagttaggggtctccttaatatctgaaagtgaattc
ttgcaaaaaattaaaaattag
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