Tyto alba (Barn owl): 104356352
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Entry
104356352 CDS
T07816
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tala
Tyto alba (Barn owl)
Pathway
tala03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tala00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104356352 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tala03400
]
104356352 (LIG4)
Enzymes [BR:
tala01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104356352 (LIG4)
DNA repair and recombination proteins [BR:
tala03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104356352 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
104356352
NCBI-ProteinID:
XP_032852843
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MASTAASQPSPKKTVASHVPFADLCSTLERIQTCKSRPEKTKYFKGFLDSWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAARLLNYRTP
AGSRGDTGDFAMIAYFVLKPRSPKRGRLTIEQVNEHLDAIANNNAAKNKGLLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAVELHNVTTDLEKVCRQLHDPSVSL
SDVSITLFSAFKPMLAAIADVQQIEKQMNNHIFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHNVFKSNIQNCILDGEMMAYSPETQTFMQKGNRFDIKRMV
EDSDLQTCYCVFDVLMVNDQKLGHEVLSKRYEILSSVFTPVTGRIHVVHKKNASTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPPPNEKPTVFHSVCRVGSGYTMKELYDLGLKLAKHWKPYRRKDPP
CNILCGTEKPEMYIEPCNSVIVQIKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAEGKLASKHLHIEEYDEPQEKKRKTVSKVKKIIGIAEQFKAPDLSSVNKV
SNVFEDVEFCVMTGMGKYSKSELESRIAEWGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTADVDVAQLK
DVFSRMKDNNMMPLDTIAELEERYSWNSCQLSIFRGNTIYVDCYAVVNEPRTKIHGTTLS
IRALELRFYGAKVVSHLEEGVSHVVIGEDRSRVKEMKAVRRTFGKKFKIVSELWVTQSVE
EGVPKNENQYLI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttccacagctgcttcccagccttctcctaaaaaaacagtggcctctcacgtgcct
tttgcagatctgtgctctactctggagcgaatacagacgtgtaaatctcgtccggagaaa
accaagtatttcaagggttttctggattcctggaggaaattccatgatgctcttcatcaa
aaggagaaagatgtcacggattctttttacccagctatgcgacttattcttccacagctg
gaaagagaaaggatggcatatggaattaaagaaactatgcttgcgaagctgtatattgaa
ctgcttaatttaccaaaagatggaaaagatgccgcaaggcttttaaattacagaacccct
gctggctcacgtggagatactggagattttgcaatgatcgcatattttgtgttaaagccc
aggagcccaaaacgaggcagactgacaatagaacaagtcaatgaacacttagatgcgata
gctaataataatgctgctaaaaacaagggtctgttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggctcatccggatgattataaaggatctcaag
cttggtgttagtcaacagactatattttccatttttcatcctgacgctgttgaattacac
aacgtcacaactgatttggaaaaagtttgcagacaactgcatgatccctctgtctcactt
agtgatgtttctatcacgttgttttctgcctttaaaccaatgcttgctgctattgctgat
gtccagcaaattgagaagcaaatgaataaccatatattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggagatgtgtataaatatttctcccgaaatggg
tttgactatacgcagcagtttggtgcttccccacttgatggttcgttaacgccatttatt
cataatgtgtttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
agtcctgagacacaaacctttatgcaaaaaggaaacagatttgacataaaaagaatggtg
gaagactctgatctgcagacttgctactgtgtgttcgatgtattgatggttaacgatcag
aagttggggcatgaagtactaagcaaaagatacgaaatcttaagtagcgtattcaccccg
gtaaccggcaggatacatgttgtacataaaaaaaatgccagcacaagaaaagaagtaatt
gatgctttaaatgaggcaatagataatagagaggaggggattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggagaaggctggttaaaaatcaagcccgaatacgtc
aatgggctgatggatgaactagaccttttaattgttggtggttactgggggaagggctcc
cgtggtggaatgatgtctcattttctgtgtgctattgcagagacgccccctccaaatgaa
aaacctaccgttttccactctgtctgtcgcgttggctctggatatactatgaaggaattg
tatgatctgggtttgaaactggctaaacactggaagccctaccgtaggaaggaccctcca
tgtaacattttgtgtggaactgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagccgagattgttaacagtgatatgtacaaaactgactgtact
ttgagattccctcgaattgagaagataagagaggacaaagaatggtatgagtgcatgact
tcagacatgttagaagatctcagaagcaaagcagaagggaagctggcatccaagcacctt
catatagaggaatatgatgagccacaagaaaaaaaaaggaaaactgtatcaaaggtgaag
aagataattggaatagctgagcaatttaaagctcctgatctttctagtgtaaacaaagtt
tcaaatgtatttgaagatgttgagttttgtgttatgacaggaatgggaaaatactcaaag
tctgaactggaaagcagaatagctgaatggggtggcagtgtggtgcagaacccggggccg
gagacttactgtgtcattgtaggagctgagaatgtcagagtaaaaaacatcattgcttcc
aacaagtacgatgtggtgagggcagagtggctccttcagtgttttcaaacgaaaatgctg
gtgccttggcagccagcctttatgattcacatgtctcctgacacaaaagaacattttgct
cgtgagtatgattgttatggagacagctacacagcggacgtagatgttgcacaactcaag
gatgtgttctcaagaatgaaagacaataacatgatgcccttggacacgattgcagagtta
gaggaacgttattcatggaacagctgtcagctcagtatattcagaggaaacactatttat
gtggactgttatgctgttgttaatgagcccagaaccaaaatccatggaacaacactatca
attagagcgttggagctccgtttttatggtgcaaaagtagtctctcaccttgaagagggt
gtctcccatgttgttataggagaagatcgttctcgggtgaaagagatgaaagcagtcagg
agaacatttgggaaaaaatttaaaattgtatctgagttgtgggtaacacagtcagtggag
gaaggagtcccaaagaatgaaaatcagtacttaatttaa
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