Thermobifida alba: FOF52_20930
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Entry
FOF52_20930 CDS
T08159
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
talx
Thermobifida alba
Pathway
talx03030
DNA replication
talx03410
Base excision repair
talx03420
Nucleotide excision repair
talx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
talx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FOF52_20930 (ligA)
03410 Base excision repair
FOF52_20930 (ligA)
03420 Nucleotide excision repair
FOF52_20930 (ligA)
03430 Mismatch repair
FOF52_20930 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
talx03032
]
FOF52_20930 (ligA)
03400 DNA repair and recombination proteins [BR:
talx03400
]
FOF52_20930 (ligA)
Enzymes [BR:
talx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FOF52_20930 (ligA)
DNA replication proteins [BR:
talx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FOF52_20930 (ligA)
DNA repair and recombination proteins [BR:
talx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FOF52_20930 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FOF52_20930 (ligA)
MMR (mismatch excision repair)
DNA ligase
FOF52_20930 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FOF52_20930 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
HHH_3
Auto_anti-p27
DUF3701
BRCT_2
DUF7741
Motif
Other DBs
NCBI-ProteinID:
UPT23098
LinkDB
All DBs
Position
4705271..4707466
Genome browser
AA seq
731 aa
AA seq
DB search
MSAPHPTPADDIPADVRERHARLSQDLDDHSYRYYLGSPIVSDAEYDRMMAELRELEDRY
PSLVTPDSPTQKAGAPISNEFAPVEHLERMQSLDNAFDDEQLTAWAHRVGAEVPVEAFLC
ELKIDGLAVDLVYEKGRLVRAATRGDGRVGEDITLNIRTIDAVPLRLDESVHPAPELLEV
RGEVFLPATAFEELNARLADEGKPPFANPRNAAAGSLRQKDPRVTASRPLSMLVHGVGAH
RGVAFTHQSQSYEMLAAWGLPVSDRTRVVSSLDEVRAYIAHYAEHRHDPEYEIDGVVVKV
DDVALQRRLGSTSRAPRWAIAYKYPPEEVTTTLLDIKTSVGRTGRVTPYAVLEPVRVAGS
EVEFATLHNAQEVARKGVLIGDTVVVRKAGDVIPEVVGPVLDKRTGAERPFVMPAECPEC
GTPLGQQKEGDVDLRCPNTRYCKGQLRERLFFIAGRKALDIEALGYVAATALTQPLEPAE
PPLRDEGDLFNLTVEQLLPIRTLVLDPDTAEPKLDPKTGEPKVVTFFANQKGEPKKTVEK
LFEQLEEAKRRPLWRVLVALSIRHVGPRAAEDLARHFRSLDAIAQASEEELVAVDGIGPT
IARSIVDWFAVDWHREIVEKWRAAGVRMAEEGADEGPRLLDGVTVVVTGSLEDYSRDGAK
EAVQELGGKVTGSVSKKTDFVVVGANPGSKYDKAVKLGVPVLDEAGFRVLLTQGPEAATA
ARLAVGETPED
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcaccacacccgacccccgccgacgacatccccgccgacgtgcgggaacggcac
gcgcggctgagccaggacctcgacgaccacagctaccgctactacctcggatcgccgatc
gtctccgacgccgagtacgaccggatgatggcggagctgcgggagctggaggaccggtac
ccgtcgctggtcaccccggactcgcccacccagaaggccggcgcccccatcagcaacgag
ttcgcgccggtcgagcacctggagcggatgcagagcctggacaacgcgttcgacgacgag
cagctgacggcctgggcgcaccgggtcggcgccgaggtcccggtcgaggcgttcctgtgc
gaactcaagatcgacggcctggccgtggacctggtgtacgagaagggccgcctggtgcgc
gccgccacccgcggggacggccgggtcggcgaggacatcaccctcaacatccgcaccatc
gacgcggtcccgctccgcctggacgagtccgtgcaccccgcgcccgagctgctggaggtg
cgcggtgaggtgttcctgcccgccacggcgttcgaggagctcaacgcccggctcgccgac
gagggcaaaccgccgttcgccaacccccgcaacgccgcggccgggtcgctgcggcagaag
gacccgcgggtcaccgcctcccggccgctgagcatgctggtgcacggcgtcggcgcgcac
cgcggggtcgccttcacccaccagtcgcagtcctacgagatgctggcggcctgggggctg
ccggtcagcgaccgcaccagggtggtctccagcctcgacgaggtccgcgcctacatcgcc
cactacgccgagcaccgccacgaccccgagtacgagatcgacggcgtcgtggtcaaggtc
gacgacgtcgcgctgcagcgccgcctcggctccaccagccgcgccccgcgctgggcgatc
gcctacaagtacccgcccgaggaggtcaccaccacgctgctcgacatcaagaccagcgtg
ggccgcaccggccgggtcaccccgtacgcggtgctggagccggtgcgggtcgccggctcc
gaggtcgagttcgccaccctgcacaacgcccaggaggtggcccgcaagggcgtgctgatc
ggcgacaccgtggtggtgcgcaaggccggggacgtcatcccggaggtcgtggggccggtg
ctggacaagcgcaccggggccgagcggcccttcgtgatgcccgccgagtgccccgagtgc
ggcaccccgctcggccagcagaaggagggcgacgtcgacctgcgctgccccaacacccgc
tactgcaaggggcagctgcgtgaacggctgttcttcatcgccggacgcaaggccctcgac
atcgaggcgctgggctacgtggcggccaccgccctgacccagccgctggaaccggccgag
ccgccgctgcgcgacgagggcgacctgttcaacctcaccgtcgagcagctgctgccgatc
cgcaccctggtcctcgaccccgacaccgccgagccgaaactcgacccgaaaaccggcgag
cccaaggtggtgaccttcttcgccaaccagaagggcgagccgaagaagaccgtcgagaag
ctgttcgagcagctggaggaggccaagcggcgcccgctgtggcgggtgctggtcgcgctg
tccatccggcacgtcggcccccgcgcggccgaggacctcgcccgccacttccgctccctg
gacgccatcgcccaggccagtgaggaggagctggtggcggtcgacgggatcggcccgacc
atcgcgcgctccatcgtcgactggttcgcggtcgactggcaccgcgagatcgtcgagaag
tggcgggccgccggggtccgcatggcggaggagggcgccgacgagggcccccggctgctg
gacggcgtcaccgtggtcgtcaccggttcgctggaggactacagccgggacggggccaag
gaggccgtgcaggaactcggcggcaaggtgaccggatcggtgtccaagaagaccgacttc
gtggtggtcggcgcgaaccccggcagcaagtacgacaaggctgtcaagctcggtgtgccg
gtcctcgacgaggcggggttccgggtgctgctcacccaggggccggaagcggccacggcg
gcacggctggccgtgggggagacccccgaggactga
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