Tardiphaga alba: RPMA_09210
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Entry
RPMA_09210 CDS
T09683
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
talz
Tardiphaga alba
Pathway
talz03030
DNA replication
talz03410
Base excision repair
talz03420
Nucleotide excision repair
talz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
talz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RPMA_09210 (ligA)
03410 Base excision repair
RPMA_09210 (ligA)
03420 Nucleotide excision repair
RPMA_09210 (ligA)
03430 Mismatch repair
RPMA_09210 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
talz03032
]
RPMA_09210 (ligA)
03400 DNA repair and recombination proteins [BR:
talz03400
]
RPMA_09210 (ligA)
Enzymes [BR:
talz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RPMA_09210 (ligA)
DNA replication proteins [BR:
talz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RPMA_09210 (ligA)
DNA repair and recombination proteins [BR:
talz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RPMA_09210 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RPMA_09210 (ligA)
MMR (mismatch excision repair)
DNA ligase
RPMA_09210 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RPMA_09210 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QUS38985
LinkDB
All DBs
Position
1965621..1967771
Genome browser
AA seq
716 aa
AA seq
DB search
MAKSPKTPPDISTLTKPKAKVELMRLSLEMEAHNKRYYQDDAPTISDADYDALRQRVEAI
EAKFPDLVQSDSPTQTVGAAPARGFAKIQHAVPMLSLGNAFSDEDVTEFVERIQRFLKLD
EIPALVAEPKIDGLSLSLRYENGELIHAATRGDGFTGEDVTANVRTIKDIPEKLKGKHIP
ASCELRGEVYMLKSDFLALNKKQEEAGDTVFANPRNSAAGSLRQKDVSITASRPLKFFAY
AWGEMSDYPMPEPTQHAMIDWLHKAGFTVNPEITLCKSVDDALTFYRRIGEIRAKLGYDI
DGVVYKVDRIDWQARLGFAGRAPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLV
PITVGGVVVSNATLHNADYIKGIGNDGQTLRDGVDIREGDTVIVQRAGDVIPQVVNVILD
KRPTTAKPYAFPDKCPVCGSHAIRENDEVVTRCTGALVCPAQAVEKLKHFVSRLAFDIDG
LGDKQIQEFYDEGIIMHPVDIFTLAKRDERNSKKLRDREGYGEVSVRNLFAAIDERRKIE
LNRLIFALGIRHIGEGNAKLLARHYGSFAAFRDAMLAAAAGQGEEGNTSEAYQDLNNIGG
VGEIVADAVVEFFAEARNVKALDELLGEIEVLDVAQAKTDTPVAGKTVVFTGSLTKFTRD
EAKASAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKARDLGVAVLTEDEWLALIGG
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatctccgaaaactccccccgacatttccacgctcaccaagccgaaggccaag
gttgagctgatgcggctgtcgctggagatggaggcgcataacaagcgctattatcaggac
gatgcgccgacgatttccgacgccgactacgacgcactgcgtcagcgggtcgaagcgatt
gaagcgaaattccccgatctcgtgcagtcggactcgccgacgcagaccgttggcgctgcg
cctgcacgcggcttcgccaaaatccagcacgcggtgccgatgctgtcgcttggcaacgcg
ttcagcgacgaggacgtcaccgaattcgtggagcgcatccagcgcttcctcaagctcgat
gaaattcccgcgctcgtcgccgagccgaagatcgacggcctttcgctgtcgttgcgttac
gagaatggcgaactgatccatgccgccactcgcggcgatggttttacgggcgaggacgtt
accgccaatgtccgcaccatcaaggacattcccgagaagctgaaaggcaagcacatcccc
gcgagctgcgagctgcgcggcgaggtgtatatgctcaagagcgacttcctcgcgctcaac
aagaagcaggaagaagccggcgacacggtcttcgccaatccgcgtaactccgcagctggc
tcgctgcgccagaaggacgtctcgatcaccgcgtcgcgtcccttaaaattcttcgcctat
gcctggggtgaaatgtcggactatccgatgccggagccgacccagcacgccatgatcgac
tggctccacaaagccggcttcaccgtcaatcccgagatcacgctctgcaaaagcgtcgat
gacgcgctgaccttctatcgtcgcatcggcgagatcagggccaagctcggctatgacatc
gatggcgtcgtctacaaggtcgatcgtatcgactggcaagcgcggcttggtttcgccggc
cgcgcgccacgctgggccatcgcgcataaatttgcggccgagcaggcgacgacggtgctt
gaaaagatcgacatccaggtcggccgcacgggcgcgctgacgccggtggcgcggctcgtg
ccgatcaccgtcggcggcgtcgtggtgtcgaatgccacgctgcataacgccgattacatc
aagggcattggcaatgacggccagacgctgcgcgacggcgtcgatatccgcgagggcgac
acggtaatcgtgcagcgcgcgggcgacgtcattccgcaggtcgtgaatgtcattctcgac
aagcgcccgacaacggcaaaaccttacgccttccccgacaagtgcccggtctgcggcagc
catgccatccgcgaaaatgatgaggtcgtcacccgctgcaccggcgcgctggtctgtccc
gctcaagcggtagagaagctcaagcatttcgtctcgcgcttggccttcgacatcgacggt
ctcggcgacaagcagatccaggaattttacgacgagggcatcatcatgcaccccgtcgat
atctttacgctggcgaaacgcgacgagcgcaacagcaagaagctgcgagaccgcgaaggc
tatggcgaagtctcggtgcgcaacctgtttgccgccatcgacgagcgccggaagatcgaa
ctcaatcgcctgatcttcgcgctcggcatccgccatatcggcgaaggtaatgcaaagctg
ctcgcccgccactacggttcgtttgccgcgttccgcgatgcgatgctggcggcagcggcc
gggcagggtgaggaaggcaacacgtcggaagcctatcaggatctcaacaatatcggcggc
gtcggcgagatcgtggccgatgcagtcgtcgagttcttcgccgaggcacgcaacgtgaaa
gcgctggacgagttgctaggcgagatcgaggtgctcgacgtcgcgcaggcgaagaccgac
acgccggtcgctggcaagacggtggtcttcacgggctcgctgacgaagttcacccgcgac
gaagcgaaggcgtcggccgagcggctgggtgcgaaggttgccggctctgtatcgaagaag
acggactatgtcgtcgccggcgaggatgccggatcgaagctgaccaaggcgcgggatctt
ggtgtggcggtgctgacggaagacgagtggttggcgctgatcgggggatga
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