Temnothorax americanus: 143894429
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Entry
143894429 CDS
T11456
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
tame Temnothorax americanus
Pathway
tame03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tame00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143894429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tame03041
]
143894429
Spliceosome [BR:
tame03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
143894429
Complex C
U5 SnRNP specific factors
143894429
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Ras
Motif
Other DBs
NCBI-GeneID:
143894429
NCBI-ProteinID:
XP_077256798
LinkDB
All DBs
Position
Unknown
AA seq
981 aa
AA seq
DB search
MDTDLYDEFGNYIGPDLASESEDENEYSNVGDDTEDRERSDEEMEEDKDESREQVDQGSS
MAVVLHEDKRYYPSALEVYGPEVETLVQEEDAQPLDKPLIAPTRKAKFQIKQQQLPETTY
SIEFLADMMDAPHLIRNVVLLGHLHHGKTTLVDCLVQQTHPYIHSTTDEKPLRYTDTLFT
EQQRGVSTKATPVTLLLQDVKSKSYLLNIFDTPGHVNFSDEATAAIRLSDGAILIVDAAE
GVMLNTERLLKHAIHEKLALTVCINKIDRLVLELKLPPLDAYYKLRHIIEEINGLIALYS
SDTENPGFVSPAVGNVCFASSEYNVCFTLKSFAALYARNYPGLNANEFAKRLWGDIYFNP
KTRKFTKKPPHNTAQRSFIEFILEPLYKIFAQVVGDVDTTLPDVLDELGIRLTSEEMKMN
IRPLLRLVCTRFLGDMCGLVDMCVAHVPSPQAHAPTKVQHVYTGPMDSPLTQDMVNCDPD
GRLMIHSTKMYPTEDCTLFVVLGRVMSGTLEAGQRVRVLGEAYSRTDEEDSRVLTVGRLW
ISEARYSIELSRVPAGNWVLIEGIDRPIVKTSTITDLNNSEELHIFRPLKFNTQSVIKIA
VEPVNPSELPKMLDGLRKVNKSYPLLGTRVEESGEHVVLGTGELYLDCAMHDLRRMYSEI
DIKVADPVVAFAETVVETSSLKCFAETPNKRNKLTMIAEPLERGLAEDIEAEHVRITWNK
KRLGEFFQTKYDWDLLAARSIWAFGPDSTGPNILVDDTLPSEVDKTLLNSARDAIIQGFQ
WGTREGPLCEEPIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPY
LFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHT
QGQAFCLSVFHHWQIVPGDPLDKSITIRPLEPQPATHLAREFMLKTRRRKGLSEDVSINK
FFDDPMLLELARQDVLLNYPL
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggacacggatttatacgatgagtttggaaattatattggtcctgatctggcgtcggag
agcgaggatgaaaatgaatatagcaatgttggcgatgacaccgaggatagagaacgatcc
gatgaagaaatggaagaagacaaggatgagtcacgagagcaagtggaccaaggctcttct
atggcagttgtattgcacgaagataagcgatattatcccagtgccctagaggtgtatgga
cctgaggtagaaacgcttgtgcaagaagaagatgctcaaccgttagataaaccactaata
gcacctactagaaaagcaaagtttcaaataaaacagcaacagttgcctgaaacgacgtat
agcattgaatttttggcagatatgatggatgcgccgcatcttattagaaatgtagttttg
ctgggacatcttcatcatggcaaaactaccttagtcgattgcttggtacaacaaacgcat
ccttatatacacagcacaaccgatgagaaaccattgagatatacagatacattatttacc
gagcagcaaagaggcgtctccacgaaagctactcccgttactctcttgctgcaagacgtt
aaatctaaatcatatcttttaaatatatttgatacacccggccacgtaaatttctctgac
gaagcgacagctgcgatccgattgtcggacggcgcgatattgatcgttgacgcggcggaa
ggcgtgatgctgaacaccgaacgtctgctgaagcacgcgattcatgaaaaactcgctttg
acagtttgcataaataagattgatcgtttggtattggagttgaaactaccacccttggac
gcttactacaaattacggcatattattgaggagatcaacgggctaatagcattgtactct
tcggataccgagaaccctggctttgtttcgcctgccgtaggaaatgtttgtttcgctagt
tccgaatataatgtgtgctttactttgaaatcatttgccgcgctctacgctaggaactat
cctggacttaatgccaacgaattcgccaaacgactctggggtgatatttatttcaaccct
aaaacacggaagtttactaagaaaccgccgcataatactgcgcagcgaagttttattgaa
tttatcctggaacctctgtataagatattcgcgcaagtcgtcggtgatgtagacacgaca
ttacccgatgttttggacgaactcggaatacgattgacatccgaggagatgaaaatgaat
atacgaccattgctgagactcgtctgcacgagattcttaggagatatgtgcggattagtg
gatatgtgtgtcgctcatgtaccgagcccgcaggcacacgcacctactaaagtgcagcac
gtctatactggcccgatggattcgcctctcacgcaagacatggttaactgcgatcccgac
ggaagactaatgatccatagtacaaagatgtatccaaccgaggattgtaccctatttgta
gttcttggcagagtaatgtccggtacattggaagcgggacaacgcgttcgcgtattaggt
gaagcgtattcgcgcacagacgaggaggactcgcgcgttctcacagtgggcagattgtgg
atcagcgaggcgcgttactcgatagagttgagtcgcgtgcctgcgggcaactgggtcctc
atagaaggtatcgatcggccgatcgtaaagactagcaccatcacggatctaaacaactcg
gaagaattgcacatctttcggccactcaagtttaatacgcagagtgttatcaaaattgcc
gtcgaaccggtcaatccatccgagttgccgaagatgttggacggtttgcgaaaggtaaac
aagagctatccgctactgggtacgcgagtggaggaaagcggcgagcatgtcgtgctggga
accggtgaactttatctcgactgcgcgatgcatgatctgcgtcgcatgtattccgagatc
gacataaaggtggccgatccggtggtcgccttcgcggaaactgtcgtggaaaccagttct
ctcaaatgctttgccgaaacaccaaataaacggaacaaattgacgatgatagcagaaccg
cttgagaggggtctcgccgaagacatagaagccgaacatgtccgtattacttggaacaaa
aagagacttggagagtttttccaaacaaaatatgattgggatttattagcagcgcgaagt
atatgggcattcggtcccgactctacgggacccaacattttagtggacgacactctgcct
tccgaagtagataaaacattgttgaacagcgcccgtgatgctatcatccaaggcttccaa
tggggaactcgcgaaggtccgttatgtgaagagccgatccggaatgtcaagttcaaaatt
cttgatgcagtcatcgcacaggagccgctgcatagaggaggtggtcaaatcatccctact
gctcgacgtgtcgcgtattccgctttcctcatggcgactccgcgactgatggagccgtat
ctgtttgtcgaggtacaagcgcccgcggactgcgtgtccgccgtttacaccgttctggcg
aaaaggcgaggtcacgtgacgcaggatgccccagttccgggcagtccgttgtatacgatc
aaggccttcataccagcgatcgacagtttcggcttcgagacagatctacgaacgcacacc
caaggtcaagcgttttgcctgtccgtttttcatcattggcagatcgtgcccggagatccc
ctggacaaaagcatcaccatcaggccgttggaaccgcagccagccacccatctggccaga
gagttcatgctgaaaacgcgaagacgcaagggactgtccgaggacgtgtccatcaacaag
ttcttcgatgatcctatgctgctcgagttggcccggcaggatgtgctactaaattatccc
ctctaa
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