Trichlorobacter ammonificans: GEAMG1_2528
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Entry
GEAMG1_2528 CDS
T09459
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tamm
Trichlorobacter ammonificans
Pathway
tamm03030
DNA replication
tamm03410
Base excision repair
tamm03420
Nucleotide excision repair
tamm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tamm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GEAMG1_2528 (ligA)
03410 Base excision repair
GEAMG1_2528 (ligA)
03420 Nucleotide excision repair
GEAMG1_2528 (ligA)
03430 Mismatch repair
GEAMG1_2528 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tamm03032
]
GEAMG1_2528 (ligA)
03400 DNA repair and recombination proteins [BR:
tamm03400
]
GEAMG1_2528 (ligA)
Enzymes [BR:
tamm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GEAMG1_2528 (ligA)
DNA replication proteins [BR:
tamm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GEAMG1_2528 (ligA)
DNA repair and recombination proteins [BR:
tamm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GEAMG1_2528 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GEAMG1_2528 (ligA)
MMR (mismatch excision repair)
DNA ligase
GEAMG1_2528 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GEAMG1_2528 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
E1-E2_ATPase
RUBY_RBDX
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
CAH2032364
LinkDB
All DBs
Position
GEAMG1:2672065..2674119
Genome browser
AA seq
684 aa
AA seq
DB search
MSPEQLSLLDAAAEADEQARRAAELRRLIEHHNRCYYEQDQPEISDAEFDRLFQELQQIE
AQRPDLLTVDSPTLRVGGTPLDRFTQVRHSLPMLSLENALHEADILAFEQRIRTLLGLAD
TEPLSWQCEPKMDGLAVELVYRDGLLVQASTRGDGEVGEEVTANIRTIASVPLRLHGNRL
PSLLEVRGEVYLPLDGFQHLNRQREEAGETPFANPRNAAAGSIRQLDSRMAAQRPLALVC
YGVGVVEGGPESATQTELMAQLAQWGLPVSHLGQKVEDIHGVIAYFSDMLSRRDSLPFEI
DGVVVKVDSLSLQRELGEKSRSPRWAIACKFPPRRATTRIRAIELSVGRTGVITPVALLE
SVDLSGVTVSRATLHNWDEIARKDIRIGDRVVVERAGDVIPAVVEVLKEQRDGTEQALPE
PAHCPVCGAPAARLDGEVAVRCQGGITCPPQLAESIIHFASRSAMDIEGLGSKYIEQLIN
LGMVRDVADLYGLTKDHFMQFERMGDKLAENLLTAIAVSKERDLAAFIFALGIRHVGERT
AKLLAERFGSIQALAAAPLDDLVAIRDVGPTVAASIRSFFDNPSHQAIVQRLLAAGVRPS
QRPAATGSHLKGLTFVFTGTMERLGRDEARRLVEQAGGNVTGSVSRKTSYVVAGSEAGSK
LDKARALGVTILTEEQFFELLEKS
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgagtccggaacagttgtccctgctcgatgcagcagcggaggccgacgagcaggcccgg
cgcgctgccgaactgcgccgcctgatcgagcatcacaaccgctgctactacgagcaggac
caacccgaaatatccgatgccgagttcgaccggctttttcaggagctgcagcagatcgag
gcccagcgtcccgacctgctgaccgtcgattctcccaccctgcgcgtagggggaacgccg
ctggaccggttcacgcaagtccgtcacagcctgccgatgctttctttggagaacgcgctg
cacgaggcggatatcctggccttcgagcagcggatacgcacgctgctgggactcgccgac
actgagccgctctcctggcagtgcgaaccgaaaatggacggtctggcagtggagctggtc
taccgtgacggtctgctggtgcaggcatccacccgcggcgacggcgaggtgggggaagag
gtcaccgccaacatccgcaccatcgcgtcggtgcccctgcgactgcacggcaaccggctc
ccctcgctgctggaagtgcggggcgaagtgtaccttccccttgacgggttccagcacctg
aaccgccagcgggaagaggcgggggagacccccttcgccaatccgcgcaacgcagccgcc
ggctccatccgccagcttgattcgcggatggcggcacaacgcccgctggcgctcgtctgt
tacggcgtgggggtggtggagggcggtcccgaaagcgccacccagacggagctgatggcg
caacttgcccagtggggactgccggtcagccacctggggcagaaggtagaggacatccac
ggggtcatcgcctatttcagcgatatgctgagccggcgcgacagccttccctttgagatc
gacggggtggtggtcaaggtggactccttaagcctgcaacgggaactgggagaaaagagc
cgctccccccgctgggctattgcctgcaaatttccgccgcgccgtgcaacaacccgcatc
agggctatcgaactctccgtgggccgcaccggcgtgatcacgccggtggcgctactggag
tcggtggacctctccggggtgaccgtctcccgcgccaccctgcacaactgggacgagatc
gcccgcaaggatatccggatcggcgaccgggtggtggtggaacgggcaggcgatgtaatt
ccggccgtggtggaggtactgaaggaacagcgcgacggcaccgagcaggcgctaccggag
cctgcgcactgtccggtctgcggtgctccggccgcccgcctcgacggcgaggtggcggtc
cgctgccagggagggatcacctgcccgccccaactggccgagtcgatcatccacttcgcc
tcccgcagcgccatggatatcgaggggctgggcagcaaatatatcgaacagttgatcaac
ctggggatggtgcgggatgtggccgatctgtacggcctgaccaaggaccacttcatgcag
ttcgagcggatgggcgacaaactggcggaaaatctgctcaccgccatcgccgtcagcaag
gaacgggacctggctgccttcatatttgccctgggcattcgtcacgtgggagagcggacc
gccaagctgctggcggagcggttcggttccatccaggccctggctgctgcccccctcgac
gacctcgtcgccatccgggacgtcggccccaccgtggcggccagtattcgctcctttttc
gacaacccgtcccaccaggccattgtacagcgcctgctggctgccggcgtcaggccgtca
caacgcccggcagccaccggcagtcacctgaagggactcacctttgtctttaccggcacc
atggaacgtctgggacgggacgaagcccgccgcctggtggaacaggccggcggcaacgtc
accggctcggtctcaaggaagacgagctatgttgtggcgggaagcgaagcgggcagcaag
ctggacaaggcgcgggccctgggggtgaccatcctgacggaggagcaatttttcgaactg
cttgagaaaagctga
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