Typha angustifolia (narrow-leaf cattail): 140758996
Help
Entry
140758996 CDS
T11061
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
KO
K16189
phytochrome-interacting factor
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
140758996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tang03000
]
140758996
Transcription factors [BR:
tang03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
140758996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
CATRA-C
Motif
Other DBs
NCBI-GeneID:
140758996
NCBI-ProteinID:
XP_072951535
LinkDB
All DBs
Position
4:join(1109397..1109488,1109597..1110470,1110613..1110711,1110792..1110857,1111162..1111227,1111314..1111613,1111690..1111816,1112200..1112204)
Genome browser
AA seq
542 aa
AA seq
DB search
MNQFVPDWNMEDDSRSFTDLLAVSNQKKPIGPDNELVELLWQNGHVVMQSQTHRKTPAAA
SNLRQVQKTESILRSSMAPGNTNGLTQDETASWFQYQLDDSFEKDFYSMFFCEMPNAEAT
GTDKMSKDAASEDGRCAIVGDTSEGNVFTASMPQQSAFHMQEKMMPSPKLNDTGSNHAPS
IENDCATNFSHFSRPLKADVGSSNRQLEEKGSGNRFHIGAVESSSMMTIGSSICKSNQVH
TQAERSHVMSNDAAIAVSRGLKKDVHTRLPSEGMNASTYEATATSSSGGSGCSFGRMGQQ
STSNQSNKRKGKEMEEPESHNEETEFESIEANKSAQRSSSTRRSRAAEVHNLSERRRRDR
INEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQMQVQIMWMGTGMAPVIFPAVHQYMS
HMGMGVNPASVPSVQTQVQLPRVPYVNQPMVSNSMVNQIPQCTPPALNAANFPNQMQNGH
LAESYARFLGLNHMQPASQAMNFYTCGPQMVHQNQTAVAPSNDILPTSGAFPPENTQRDK
TS
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaatttgttcctgactggaatatggaagacgactctagatcatttacagatctt
cttgcagtgtcgaatcaaaagaaacctattgggccggataatgagcttgttgaactctta
tggcaaaatgggcatgttgttatgcaaagtcagactcatcggaaaacaccagctgcagcc
agcaacctcagacaagttcagaaaactgagtcaatattaaggtcaagcatggctcctggg
aacacgaacggtctgactcaagatgagactgcatcatggtttcagtaccaacttgatgat
tcattcgagaaagatttctactcaatgttcttctgtgaaatgccaaatgcagaagccact
ggcactgataagatgagcaaggatgctgcttcagaggacgggagatgtgcgattgttggt
gacacaagtgaaggcaatgtttttactgcatctatgcctcagcagtccgcttttcatatg
caagaaaaaatgatgccttctcctaaattgaacgatacgggttctaaccatgctccaagc
atagagaatgactgtgccactaacttttcccacttctctaggccactgaaggctgacgtg
ggatcatcgaaccgtcagttggaggagaagggatcaggaaataggtttcacattggagct
gtagagtcctcctcgatgatgacaattggatcaagcatttgtaaaagtaaccaagttcac
acacaggccgagcgaagccatgttatgagcaatgatgcagctattgctgtttcgagaggc
ttgaaaaaggatgttcatactaggttgccctctgaagggatgaatgcaagcacttatgaa
gccactgccacttcatcatcaggtgggtctggttgtagttttggaagaatgggacaacag
agcacaagcaaccagagcaacaagaggaagggaaaagaaatggaagaacctgaaagtcac
aatgaggaaactgagtttgagtccattgaagcaaacaaatcagctcagcgctcttcatct
acacgcagaagtcgtgctgctgaagttcataacctatcagagagaagaagacgggaccga
attaatgaaaaaatgagggcattgcaagagctcatacctcattgcaacaagactgacaaa
gcgtcgatgttagatgaggcaattgagtacttgaagtcgcttcaaatgcaagtccagatt
atgtggatgggaacaggtatggcaccagttatatttcccgctgtccaccagtacatgtct
cacatgggtatgggtgttaatcctgcctctgtgccttcagtgcaaactcaagttcaactg
ccaagagtaccatatgtcaatcaacctatggtttcaaattctatggtaaatcagatacca
cagtgtacacctccagctctaaatgcagctaattttccaaaccaaatgcaaaatggtcat
cttgctgaatcgtacgcacgtttccttggtctcaatcacatgcagccagcgtctcaggca
atgaatttctatacatgtggacctcaaatggtgcatcagaatcagactgcagttgctcct
agtaatgatattttacctacttcgggagcatttcctcctgaaaatacacaaagggacaaa
actagttaa
DBGET
integrated database retrieval system
