Typha angustifolia (narrow-leaf cattail): 140776516
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Entry
140776516 CDS
T11061
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140776516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tang03019
]
140776516
Messenger RNA biogenesis [BR:
tang03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140776516
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_23
Arf
AAA_15
AAA_25
AAA
nSTAND3
ORC-CDC6-like
AAA_28
AAA_7
AAA_24
Motif
Other DBs
NCBI-GeneID:
140776516
NCBI-ProteinID:
XP_072976347
LinkDB
All DBs
Position
14:join(2167050..2167221,2167301..2167434,2168033..2168152,2168314..2168409,2168523..2168675,2168758..2168835,2170625..2170864)
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AA seq
330 aa
AA seq
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MADESNEAPVVVEVNNLSFTYPGIDGHAPPGSKPLIDGLSLSLRAGNRCLLVGANGAGKT
TILKILGGKHMVDPAMVRILGRSAFHDTNLTSSGDLSYLGGEWRRDVAFAGFQVAIQIDV
SAEKMIYGVSGIDPQRRDELIKILDIDLSWRLHKASDGQRRRVQICMGLLKPFKVLLLDE
ITVDLDVLARANLLKYLRKECEERGAVIIYATHIFDGLDDWPSHIVYVADGKLQLALPLG
KVKETSNLSLMRTVESWLRKEKDDNKKRRQERKANGLLEHEKPIEGSRVIGDPARSAARV
LNNGWAAGRLHSTLAGEENFLLSSNRVLRQ
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaatccaacgaagctcccgtagtagtcgaagtgaacaacctttccttcacg
tatccggggatcgacggccacgcgccgccgggatcgaagcctctcattgatggcttatct
ctctccctccgcgctggcaaccgttgcctccttgtcggagccaatggcgccgggaaaacg
acgatactgaagattttgggagggaaacacatggtggatccggccatggtccgaatcttg
gggaggtcggcgtttcatgatactaatctcacttcttccggtgatctttcctacttgggc
ggagagtggaggagggatgttgcatttgctggttttcaggtagctatacagatagatgtt
tctgcagagaagatgatatatggagtttcaggcatcgatcctcaaaggagggatgaactt
attaagatattagatattgatctttcatggcgattgcacaaagcatcagatggtcaaaga
aggcgagttcaaatttgtatgggccttctaaagccatttaaggttcttcttcttgatgag
attacagttgacctagatgtgctggcaagggccaatcttttgaaatatctaaggaaagaa
tgtgaagaacgaggtgcagtgatcatttatgcaacacatatttttgatggtcttgatgat
tggccgtcgcatattgtatacgtcgcagacgggaagttgcaactggcattgcctttggga
aaagtgaaagaaacgagtaacttatctctcatgagaacagtggagagctggttgcgaaaa
gagaaggatgacaataagaagagaagacaggagaggaaggcgaacggtctattggaacat
gagaagccaatcgagggaagtcgagtaataggagaccctgccagaagtgcagctcgagta
ttgaataatggttgggcagctgggagattacattcaacactagcaggggaggagaatttc
cttctcagttctaacagggttcttaggcaataa
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