Candidatus Thiothrix anitrata: J8380_12495
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Entry
J8380_12495 CDS
T07878
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tani
Candidatus Thiothrix anitrata
Pathway
tani03030
DNA replication
tani03410
Base excision repair
tani03420
Nucleotide excision repair
tani03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tani00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J8380_12495 (ligA)
03410 Base excision repair
J8380_12495 (ligA)
03420 Nucleotide excision repair
J8380_12495 (ligA)
03430 Mismatch repair
J8380_12495 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tani03032
]
J8380_12495 (ligA)
03400 DNA repair and recombination proteins [BR:
tani03400
]
J8380_12495 (ligA)
Enzymes [BR:
tani01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J8380_12495 (ligA)
DNA replication proteins [BR:
tani03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J8380_12495 (ligA)
DNA repair and recombination proteins [BR:
tani03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J8380_12495 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J8380_12495 (ligA)
MMR (mismatch excision repair)
DNA ligase
J8380_12495 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J8380_12495 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
QTR51828
UniProt:
A0ABX7X9C9
LinkDB
All DBs
Position
2446795..2448804
Genome browser
AA seq
669 aa
AA seq
DB search
MSDMQTQLEKLRQQLRYHNHLYYVLDDPQIPDVEYDRLFRELQSLEAAHPELITPDSPTQ
RVGAAPLTEFGEIKHAIPMLSLGNVFSDEELLAFDKRIHDRLKSDAETEFVAEPKLDGLA
ISILYENGVFTRAATRGDGETGEDVTHNVRTIASVPLRLLGEGYPTVLEVRGEIYMPKAG
FEAFNAKMRALGEKTFVNPRNAAAGSLRQLDPRLTAQRPLDIFCYAVGQVEGGIVPDTHY
AILQQFRAWGLRVCPDIRIVQGAQGCLDYFREIGARRNGLPYDIDGVVYKVNSIATQQEL
GFISRAPRWAIAHKFPAQEEITELEGVDFQVGRTGALTPVARLKPVFVGGVTVSNATLHN
MDEIERKDVRIGDFVIVRRAGDVIPEVASVILERRPAGAAPIVMPTHCPVCGSEVQRPEG
EAVARCTGGLYCPAQVKEAIKHFASRKALNIDGLGDKMVEQLFDAGLIRHVDDLYSLDVE
AVAALERMGKKSAENLIAALESSKSTTLERFIYALGIRNAGEGTAKGLARYFGSLEAIQA
ANEETLKLVPDIGVIVAANVAQFFAEAHNRDTIQHLRDLGVHWANYEAKPAEALPLAGKT
YVITGTLSRAREDIKADLEALGAKVSGSVSKKTTALIAGENAGSKLTKAQELGVEILGED
TLSVLLRQS
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacatgcaaacgcaactcgaaaaactacgtcaacaactgcgttatcacaatcat
ttgtactacgtactggacgacccgcaaatccccgatgtggaatacgaccgcctgttccgc
gagttgcaaagccttgaagccgcacacccagaactgataacccccgattcgcccacgcag
cgtgtcggggctgcgccactcaccgaattcggtgaaatcaaacacgccattccgatgctg
tccttgggcaacgtgttcagcgatgaagaattgctggcattcgacaaacgcattcacgac
cgcctgaaatcggatgccgaaaccgaattcgtcgccgaacccaagctcgacggtttggcg
atcagcatcctctacgaaaacggcgtattcacccgtgccgcgacccgtggcgatggcgaa
accggcgaagacgtgactcacaatgtacgcacgattgcctccgtacccttgcgcttgctg
ggtgaaggctacccgacggtgttggaagtgcgtggcgaaatctacatgcccaaagcgggg
tttgaagccttcaacgccaaaatgcgggcattgggcgaaaaaaccttcgttaacccgcgt
aatgccgcagcaggcagtttgcgccagctcgatcctcgcctcaccgcacaacgtccgctg
gatattttttgctacgcggtagggcaggttgaaggtggcatagtgccggatacccattac
gcgattctgcaacaattccgtgcgtggggtttgcgggtgtgcccggatattcgcatcgtg
cagggggcgcaaggttgcctcgactatttccgcgagattggcgcacggcgtaacggcttg
ccctatgacatcgacggcgtggtctataaagtcaacagcattgccacccaacaagaactc
ggttttatcagccgtgcgccgcgttgggcaatcgcgcataaatttcccgcgcaggaagaa
atcactgaactcgaaggcgttgatttccaagtcgggcgcaccggcgcactcacacccgtt
gcccgtctcaaacccgtattcgtcggtggcgtgaccgtcagcaatgcgaccttgcacaat
atggatgaaatcgagcgcaaagacgtgcgtatcggcgatttcgtgatcgtgcgcagggca
ggggacgtgattcccgaagttgccagcgtgatcctcgaacgccgtcccgcaggtgctgca
ccgatcgtcatgcctacgcattgccccgtgtgcggttcagaggtgcaacgccccgaaggt
gaagccgtcgcccgctgtaccggcggtttgtattgccccgcgcaagtcaaagaagccatc
aaacacttcgcctcgcgcaaagccctgaacatcgacggcttaggcgacaaaatggtagag
caattgtttgatgccggtttgatccgccacgttgacgacctctacagtctggatgtggaa
gccgtcgccgcgttggagcgcatgggcaaaaaatctgccgaaaacctcattgccgctctc
gaaagcagcaaatccaccacgttggaacgctttatttacgcgctaggcatccgcaatgca
ggcgaaggcactgccaaaggtttggcacgttacttcggctcactcgaggcgattcaagct
gctaatgaagaaaccctgaagctagtgcctgacatcggcgtgatcgtggcggcaaatgtt
gcccagttttttgcagaagcgcataaccgcgataccatccagcacttgcgcgatttgggc
gtgcattgggcgaactacgaagccaagcctgccgaagctttgccattagcgggcaagact
tacgtgattaccggcacactcagtcgggcgcgtgaggacatcaaagccgacttggaggcg
ttaggggcgaaagtgtcgggcagcgtttccaagaaaaccacggcattgattgcgggtgag
aatgctggttcaaagttaactaaagcgcaagagttgggtgtggaaatcttgggagaagac
actttatccgttcttttgcgccaatcgtaa
DBGET
integrated database retrieval system
