Thermus antranikianii: KNN15_00540
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Entry
KNN15_00540 CDS
T07371
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tant
Thermus antranikianii
Pathway
tant03030
DNA replication
tant03410
Base excision repair
tant03420
Nucleotide excision repair
tant03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KNN15_00540 (ligA)
03410 Base excision repair
KNN15_00540 (ligA)
03420 Nucleotide excision repair
KNN15_00540 (ligA)
03430 Mismatch repair
KNN15_00540 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tant03032
]
KNN15_00540 (ligA)
03400 DNA repair and recombination proteins [BR:
tant03400
]
KNN15_00540 (ligA)
Enzymes [BR:
tant01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KNN15_00540 (ligA)
DNA replication proteins [BR:
tant03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KNN15_00540 (ligA)
DNA repair and recombination proteins [BR:
tant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KNN15_00540 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KNN15_00540 (ligA)
MMR (mismatch excision repair)
DNA ligase
KNN15_00540 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KNN15_00540 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
PTCB-BRCT
DNA_ligase_ZBD
HHH
RNA_pol_A_CTD
BRCT_2
DUF3274
OrfB_Zn_ribbon
zf-ribbon_3
Motif
Other DBs
NCBI-ProteinID:
QWK22016
LinkDB
All DBs
Position
complement(106880..108904)
Genome browser
AA seq
674 aa
AA seq
DB search
MTLEEARKRINELRDLIRYHNYRYYVLDAPEISDAEYDRLLRELKELEERFPELKSPDSP
TEQVGAKPLEATFRPIRHPTRMYSLDNAFTLEEVRAFEERIERALGRKGPFVYTVEHKVD
GLSVNLYYEEGILVWGATRGDGETGEEVTQNLLTIPTIPRRLQGVPERLEVRGEVYMPIE
AFLRLNEELEEKGEKIFKNPRNAAAGSLRQKDPRITARRGLRATFYALGLGLEESGLKTQ
LDLLHWLREKGFPVEHGFARAEGAEGVERIYQDWLKERRSLPFEADGVVVKLDELSLWRE
LGYTARAPRFAIAYKFPAEEKETRLLQVVFQVGRTGRVTPVGILEPVFIEGSEVSRVTLH
NESYIEELDVRIGDWVLVHKAGGVIPEVLRVLKEKRTGEERSIRWPETCPECGHRLVKEG
KVHRCPNPLCPAKRFEAIRHYASRKAMDIGGLGEKLIEKLLEKGLVKDVADLYRLKEEDL
VGLERMGKKSAGNLLRQIEESRSRGLERLLYALGLPGVGEVLARNLAAHFGTMDRLLEAT
LEELLQVEEVGELTARGIYETLQDPAFRDLIRRLKEARVEMEAKERGEEALKGLTFVITG
ELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGEAPGSKLEKARALGVPTLTEEELYRL
IEERTGKRVETLAS
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgaccctggaagaggcacgcaaacggatcaacgagctccgggacctcatccgctaccac
aactaccgttactacgtcctggatgccccggagatctccgatgccgaatacgaccggctt
ttgagggagcttaaggagttggaggaacgctttcccgagctcaaaagcccggattccccc
acggagcaggtgggggctaagcccctcgaggccaccttccgccccatccgccatcccacc
cgcatgtactccctggataacgccttcaccctggaggaggtcagggcctttgaggagcgg
atcgagcgggccttggggaggaaggggcccttcgtgtacacggtggagcacaaggtggat
ggcctttccgtgaacctctactacgaggaagggattctggtatggggggccacccggggg
gacggggaaacaggggaggaggtcacccagaacctcctcaccatccccaccattccccga
aggcttcaaggggtaccggagcgcctcgaggtccggggcgaggtgtacatgcccatagag
gccttcctccgcctcaacgaggagctggaggaaaagggagagaagatcttcaaaaacccc
aggaacgccgccgccggctccctcaggcagaaggacccccggatcaccgcaaggaggggc
ctcagggccaccttctacgccttgggcctcggcctggaggaaagcgggctcaagacccag
ctggacctccttcactggcttagggagaagggatttcccgtggagcacggcttcgcccgg
gcagaaggggcagagggggtggaaaggatctaccaggactggctgaaggagcggcgaagc
ctgccctttgaggcggatggggtggtggtgaagctggatgagctttccctctggcgggaa
ctggggtacaccgcccgggccccgcgctttgccatcgcctacaagttccccgcggaggag
aaggaaacccgcctgctgcaggtggtcttccaggtggggcgcacgggcagggtgacgccg
gtgggcatcctggagcccgtcttcattgagggaagcgaggtcagccgggttaccctgcac
aatgaaagctacatcgaggagctggacgtgcgcatcggggactgggtcctggtgcacaag
gcggggggggtgatccccgaggtcctcagggtcctgaaggagaagaggactggggaggag
agatccattcgctggccggaaacctgtcccgagtgcggccaccgcctggtcaaggagggc
aaggtgcaccgctgccccaatcccttgtgcccggccaaacgctttgaggccatccgtcac
tacgcctcccgcaaggccatggacatcgggggcctcggggagaagctcattgagaagctc
ctggaaaagggcttggtgaaggatgtggccgacctttaccggcttaaggaggaggacctg
gtgggcctcgaacgcatggggaagaagagcgcagggaaccttctccgccagattgaggag
agccggagccggggcctggagcggctcctctatgccctggggctgccgggggtgggggag
gttctggcccgcaacctggcggcccacttcggcaccatggaccgcctcctcgaggccacc
ctggaggaactcctccaggtggaggaggtgggggagctcaccgcccgggggatttacgaa
accctgcaggaccctgccttccgggacctgataaggcgcctcaaggaggctcgggtggag
atggaggccaaggaacggggggaggaggctttaaagggccttaccttcgtcatcaccggg
gagctttcccgcccgcgggaggaggtgaaggccctcttaaggcgcttaggggctaaggtg
accgactccgtgagccgcaagaccagctacctggtggtgggggaggccccggggagcaag
ctggagaaggcccgggccctgggggtgcccaccttgacggaggaggagctgtacaggctc
atagaggagcgcacggggaagcgtgtggaaaccttagcttcctag
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