Thiomicrospira aerophila: THIAE_05325
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Entry
THIAE_05325 CDS
T03589
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tao
Thiomicrospira aerophila
Pathway
tao03030
DNA replication
tao03410
Base excision repair
tao03420
Nucleotide excision repair
tao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THIAE_05325
03410 Base excision repair
THIAE_05325
03420 Nucleotide excision repair
THIAE_05325
03430 Mismatch repair
THIAE_05325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tao03032
]
THIAE_05325
03400 DNA repair and recombination proteins [BR:
tao03400
]
THIAE_05325
Enzymes [BR:
tao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
THIAE_05325
DNA replication proteins [BR:
tao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
THIAE_05325
DNA repair and recombination proteins [BR:
tao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
THIAE_05325
NER (nucleotide excision repair)
GGR (global genome repair) factors
THIAE_05325
MMR (mismatch excision repair)
DNA ligase
THIAE_05325
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
THIAE_05325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
SnoaL_2
Flavodoxin_NdrI
Motif
Other DBs
NCBI-ProteinID:
AHF01290
UniProt:
W0DRP8
LinkDB
All DBs
Position
complement(1081452..1083563)
Genome browser
AA seq
703 aa
AA seq
DB search
MKDDVSVLTQQDYLLLCAEIMLHNQAYYRDDRPIISDAQYDQLYQRLLAVEAVHPDWVTE
HSPSQQVGFASHQAFAPITHRMPMLSLNNSFDDQDLSAFYQRAYDRLVQIQHPLVAKSTT
ELAFFAEPKLDGLALSLRYESGRLVTAATRGDGETGEDVTHNVRTIQDIPKRLRGDHWPA
VLEVRGEVFMTKASLASLNEQQLARGDKPFANPRNAAAGSLRQLDAKVTAQRTLNFFCYG
WGEVSEDIPWPKDYPGVMALLAQWGLPINPLGQAVAGLDKMLAYYQQLSQKRPDLAYEID
GIVYKLADLSAQTALGFTAKFPRWAIARKFPAQEVWTDLLGIDIQVGRTGALTPVARLTP
VAVGGVVVSNATLHNLDEIRRKDIRIGDKVIVRRAGDVIPEIVASLADQRVGELAEFSMP
SQCPVCDSAVFKDPDKAVYRCSGGLYCPAQQQRALEHFVSRKAMDIQGLGSKVITQLVAA
GLVSHPDDFYQLTLESLLKLERMAEKSAQNLLDAIAASKQITFARFIFALGIAEVGEVTA
KNLARTFSSIDDLIAADTSQLLAITDIGPVVAEQIQRFFAQAHNREVISGLIAAGIHWPT
SSSNQSLSKQANDSTQQATDDHPFVNKTLVITGSFDEFSRIELAERFESLGAKVTSSVSK
NTDFLIAGDKAGSKLTKAEALGIPIIKADELTRVLGAVDGSTT
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatgacgtttcggttttaacccaacaggactacctcctactttgtgctgagatt
atgctgcacaatcaagcctactatcgggacgatcgcccgattatcagtgatgcgcaatac
gatcagctttatcaacgccttctcgctgttgaagctgtgcacccagactgggtgacggaa
cattcgccatcgcaacaagttggttttgcttcccatcaggcttttgcacctataacccat
cgcatgcctatgctgtcgttaaataacagttttgatgaccaagatctgagtgccttttat
caacgcgcttatgatcgtctggtccagattcagcatccattagttgctaaatccacaact
gaattggcgttttttgccgaacccaagctcgatggtttggcactaagtttgcgctatgaa
tcagggagattagtcaccgcagcgacccgtggcgatggtgaaacaggtgaggatgtcact
cataatgtgcgcactattcaagatattcccaagcgattgcgaggtgatcactggccagcg
gtattagaagtccgcggtgaagtgtttatgaccaaagcatcgttagcgtcgctcaatgag
caacaactcgccagaggtgataaaccctttgcgaatccacgcaatgcagcagcaggtagt
ttaagacaattagatgcgaaggttaccgcacaacgcactttgaactttttttgctatggc
tggggtgaagtcagtgaggacattccttggccgaaagactaccctggtgtgatggcgtta
ttagcacaatggggtttaccgattaacccgcttggccaggcagtagcaggcctggataag
atgctggcctattatcagcagttatctcagaagcggccagatttggcctatgagattgat
ggcattgtctataaattagcggatttatcggcgcaaacggcactcgggtttaccgcaaaa
tttccgcgctgggccattgcacgcaagtttccggcgcaagaggtgtggactgacttatta
ggcatcgacattcaggttggacgtaccggggcactgaccccggtggcacgacttacgcca
gtggctgtaggtggcgtagtggtgtccaatgccaccttgcataatcttgatgaaattcgg
cgcaaagatattcgcataggggacaaggttatcgtcagacgtgccggtgatgtgattccc
gagatcgtcgcctcacttgctgatcaacgagtgggcgagctagccgaatttagcatgcca
tctcagtgtcctgtatgcgactccgcggtatttaaggatcctgacaaagcggtttatcgc
tgtagcggaggcttgtattgtcctgcgcaacagcagcgcgcactagagcattttgtgtcg
cgtaaagcgatggatatccaaggcttaggcagtaaagtcatcacccaattagtcgcggcc
ggtttggtgtcccatcctgatgatttttatcagctgacattggagagtttattaaaactt
gagcggatggcagaaaaatcagcccagaatctgctggatgcaatagccgcatccaagcaa
atcacctttgcgcgcttcatttttgcgctaggtattgcggaggtaggtgaggtgacggcc
aaaaacctggcgcgtacctttagctcaattgatgatttaattgcggccgataccagccaa
ctactggcgattaccgatattggtcctgtagtggctgagcaaattcagcgattttttgcc
caggcacataatcgtgaagtgattagcggactgatcgcagccggcattcattggcccact
agcagctcaaaccaaagcctaagcaaacaggccaatgactcaacccagcaagcgacagat
gatcatccgtttgttaataagaccctggtgattaccggcagttttgatgaattttctcga
attgagctggcagagcgctttgaaagtttgggcgctaaagtgaccagtagcgtctccaaa
aatacggattttctcattgccggtgataaagccggttcaaaactaaccaaagctgaggcg
ttgggcattcccatcatcaaggctgatgaattaacgcgcgttttaggagcagtagatggt
tcgaccacgtaa
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