Tardiphaga sp. 709: RSO67_26955
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Entry
RSO67_26955 CDS
T10683
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tard Tardiphaga sp. 709
Pathway
tard03030
DNA replication
tard03410
Base excision repair
tard03420
Nucleotide excision repair
tard03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tard00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RSO67_26955 (ligA)
03410 Base excision repair
RSO67_26955 (ligA)
03420 Nucleotide excision repair
RSO67_26955 (ligA)
03430 Mismatch repair
RSO67_26955 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tard03032
]
RSO67_26955 (ligA)
03400 DNA repair and recombination proteins [BR:
tard03400
]
RSO67_26955 (ligA)
Enzymes [BR:
tard01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RSO67_26955 (ligA)
DNA replication proteins [BR:
tard03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RSO67_26955 (ligA)
DNA repair and recombination proteins [BR:
tard03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RSO67_26955 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RSO67_26955 (ligA)
MMR (mismatch excision repair)
DNA ligase
RSO67_26955 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RSO67_26955 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
WNV09065
UniProt:
A0AA96SSX2
LinkDB
All DBs
Position
5581061..5583211
Genome browser
AA seq
716 aa
AA seq
DB search
MAKPAKIPPDISTLTKPKAKIELMRLSLEMEAHNKRYYQDDAPTVSDAEYDALRRRVEAI
EAKFPDLVTGASPTQTVGAAPARGFAKVQHVVPMLSLGNAFSDEEVTEFVERIQRFLKLD
EIPAIVAEPKIDGLSLSLRYENGELIRAATRGDGFTGEDVTANVRTIKDIPTTLKGKHIP
TACELRGEVYMLKSDFLALNKKQEEAGDTVFANPRNSAAGSLRQKDVAITASRPLKFFAY
AWGEMSDYPMDQPTQHAMIAWLGNAGFTVNPEITLCRSVDDALAFYRRIGEIRAKLDYDI
DGVVYKVDRIDWQARLGFAGRAPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLT
PITVGGVVVSNATLHNADYIKGIGNDGQPLRDGVDIREGDTVIVQRAGDVIPQVVNVDLD
KRPKSAKPYEFPTKCPVCGSHAIRENDEVVTRCTGALVCPAQAVEKLKHFVSRLAFDIDG
LGDKQIQEFYDEGIIMHPVDIFTLQKRDERNTKKLRDREGYGETSVRNLFAAIDDRRKIE
LNRLIFALGIRHIGEGNAKLLARHYGSFTTFRDAMLAAAAGQGAEGNTSEAYSDLNAIDG
VGEIVADAVVEFFAEKRNVKALDELLGEIEVLDVAQAKTDTPVAGKTVVFTGSLTKFTRD
EAKAGAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKARELGVAVLTEDEWLALIGG
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacccgcaaaaattccccccgacatctccacgctcacgaagcccaaagccaag
atcgagctgatgcggctgtcgctggagatggaggcgcacaacaagcgctactatcaggac
gacgcgccgacggtgtcggatgcggagtatgacgcgctgcggcgccgggtcgaggcgatc
gaggccaaattccccgatcttgtcaccggcgcgtcgccgacacagacggtcggcgcagcg
cccgcgcgcggctttgccaaggtgcagcatgtggtgccgatgctgtcgctgggcaatgcg
ttcagcgatgaggaagtgaccgaattcgtggagcgcatccagcgcttcctcaagctcgat
gaaatcccggccatcgtcgccgagccgaagatcgatggcctgtcgctgtcgctgcgctac
gagaatggcgaactgatccgcgccgccacgcggggcgacggattcaccggcgaggacgtc
acggccaatgtccgcaccatcaaggacattccaacgacgctgaagggcaagcacatcccc
accgcctgcgaattgcgcggcgaggtctatatgctcaagagcgacttcctcgcgctgaac
aagaagcaggaagaggctggcgacaccgtctttgccaatcccagaaattccgcggccggc
tcgctgcgccagaaggacgtggcaatcacggcgtctcgtccgctgaaattcttcgcctat
gcctggggcgaaatgtcagactatccgatggatcagccgacccagcatgcgatgatcgcg
tggctgggcaatgccggcttcacggtcaatcccgagatcacgctgtgtaggagcgtcgac
gatgcgctcgccttctatcgccgcatcggcgagatcagggccaagctcgactatgacatc
gacggcgtcgtctacaaggtcgatcgcatcgactggcaggcacggctcggtttcgccggt
cgcgcgccgcgttgggcgatcgcgcataaattcgcggccgagcaggcgacgacggtgctg
gaaaagatcgacattcaggtcggccgcaccggcgcactgacgccggtggcgcggttgacg
ccgattacggtcggcggcgtcgtggtgtcgaacgccacgctgcataatgcggattacatc
aaaggcatcggcaatgacggccagccgctgcgcgacggcgtcgatattcgcgaaggcgac
acggtgatcgtgcaacgcgccggcgacgtcatcccgcaggtcgtcaatgtcgacctcgac
aagcgtccgaagagcgcaaagccgtatgaatttcccaccaagtgtccggtctgcggcagc
catgcgatccgcgagaatgacgaagtcgtcacgcgctgcaccggcgcgctggtgtgcccg
gcgcaggcggtcgagaagctcaagcatttcgtctcgcggttggccttcgatatcgacggc
ctcggcgacaagcagatccaggaattctacgacgaggggatcatcatgcatcccgtcgat
atcttcacgctgcaaaagcgcgacgagcgcaacaccaagaagctgcgcgaccgtgaaggt
tacggcgagacctcggtgcgcaatctgtttgccgccatcgacgatcgccgcaagatcgag
ctcaatcgtctgatctttgcgctcggcattcgccatatcggcgaaggcaatgccaagctg
ctggcgcgacactatggatcattcacaacgttccgcgatgcgatgctggcggctgctgcg
gggcagggcgcggaaggtaatacgtctgaagcctattccgatctcaacgccatcgacggc
gtcggtgaaatcgtcgcggacgcggtcgtcgagttcttcgccgagaagcgtaacgtcaag
gcgctcgatgaattgctcggtgagatcgaggtgctcgatgtcgcacaggccaagaccgat
acgccggtggccggcaagacggtggtgttcacgggctcgctgaccaagttcacgcgtgat
gaagccaaagccggcgccgagcgcctcggcgccaaggtcgcaggctcggtgtcgaagaag
acggactatgtggtggccggcgaggatgccggctcgaagctcaccaaggcgcgcgagctc
ggcgtcgcggtgctcacggaagatgagtggttggcgctgatcggcgggtag
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