Tardiphaga sp. vice154: FIU28_09430
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Entry
FIU28_09430 CDS
T11090
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tarv Tardiphaga sp. vice154
Pathway
tarv03030
DNA replication
tarv03410
Base excision repair
tarv03420
Nucleotide excision repair
tarv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tarv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FIU28_09430 (ligA)
03410 Base excision repair
FIU28_09430 (ligA)
03420 Nucleotide excision repair
FIU28_09430 (ligA)
03430 Mismatch repair
FIU28_09430 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tarv03032
]
FIU28_09430 (ligA)
03400 DNA repair and recombination proteins [BR:
tarv03400
]
FIU28_09430 (ligA)
Enzymes [BR:
tarv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FIU28_09430 (ligA)
DNA replication proteins [BR:
tarv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FIU28_09430 (ligA)
DNA repair and recombination proteins [BR:
tarv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FIU28_09430 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FIU28_09430 (ligA)
MMR (mismatch excision repair)
DNA ligase
FIU28_09430 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FIU28_09430 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QDM21322
LinkDB
All DBs
Position
2017386..2019539
Genome browser
AA seq
717 aa
AA seq
DB search
MAKTAAKNSPDLATLTKAKAKVELMRLSLEMEGHNVAYYQNDAPKISDADYDTLRRRVEA
IEQKFPDLVSGASPTQTVGAAPSRAFAKLQHAVPMLSLGNAFSDEEVAEFVARIQRFLKL
DEVPAIVAEPKIDGLSLSLRYEHGELVRAATRGDGFTGEDVTANVRTIDDVPNKLHGKNH
PAACELRGEVYMLKSDFLALNARQVEAGEDPFANPRNSAAGSLRQKDVSVTASRPLKFFA
YAWGEMSDYPIDEPTQWGMLDWLKQAGFTVNPEITQCASVEDALAFYRRIGEQRASLPYD
IDGVVYKVDRIDWQARLGFAGRAPRWAIAHKFAAEQATTILDKIDIQVGRTGALTPVARL
QAVTVGGVVVQNATLHNEDYIKGVGNDGQPVHDGIDIREGDTVVIQRAGDVIPQVVSVVL
TMRPTESKPYEFPKTCPACGSHAIRENGEVVTRCTGALICPAQAVERLKHFVSRLAFDID
GLGDKQIQEFYDDGLIMHPVDIFTLQKRDERSSKKIIDREGFGEVSVRNLFSAIDNRRKI
ELNRLIFALGIRHIGEGNAKLLAKHYGSFAAFRDAMLAAAAGQTAEGNNSEAWQDLNNIG
GVGEIVADAVVEFFAETRNVKALGELLDEIEVLDVEQAKSDTAIAGKIVVFTGSLTKFTR
DEAKARAERLGAKVAGSVSKKTDYVVAGEDAGSKLKKATELGVTVLTEDEWLKLIEG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggccaagacagcagcgaagaattcccccgacctcgccaccctcaccaaggccaaagcc
aaggtcgagttgatgcggctgtcgctcgagatggagggacataacgtcgcctactatcag
aacgacgcgccgaaaatatcggatgccgactacgatacgctgcgccgccgcgtcgaggcg
atcgagcagaaatttcccgatctggtcagcggcgcctcgccgacgcagacggtgggagcc
gctccctcgcgcgcctttgccaagttgcagcatgcggtgccgatgctgtcgctcggcaat
gcgttcagcgacgaggaggtcgccgaattcgtcgcgcgcatccagcgcttcctcaagctc
gacgaggtgcctgccatcgtcgccgagccgaagatcgacgggctgtcgctgtcgctgcgc
tatgagcacggcgaactggtgcgcgccgccacccgtggcgacgggttcacgggcgaagac
gtcaccgccaacgtccgcaccatcgacgacgttccgaacaagttgcatggcaagaatcat
cccgccgcctgcgaattgcgcggcgaggtctacatgctgaagagcgattttctcgcgctg
aacgcgcgccaggtcgaggcgggtgaagacccgttcgctaatcccagaaattccgccgcc
ggctcgctgcggcagaaagacgtctcggtcaccgcctcccggccgctgaaattcttcgcc
tatgcctggggcgagatgtcggactatcccatcgacgagccgacgcagtggggcatgctt
gactggctgaagcaggccggcttcaccgtcaatccggagatcacgcaatgcgccagcgtc
gaggacgcactggcgttctatcgccggatcggcgagcagcgcgcgtcgctgccctatgac
atcgacggcgtggtctacaaggtggaccgtatcgactggcaggcgcgactgggctttgcc
ggccgcgcgccgcgctgggccatcgcgcataaattcgcggcggagcaggcgaccaccatc
ctcgacaagatcgacatccaggtcggccgcaccggcgcgctgacgccggtggcgcggctg
caggcggtgacggtcggcggcgtcgtggtgcagaacgccacgctgcacaatgaggactac
atcaagggcgtcggcaatgacggccagccggtgcacgacggcatcgacatccgcgagggc
gacacggtcgtgatccagcgcgccggcgacgtgatcccgcaggtggtcagcgtggtgcta
acgatgcggccgacagagtcgaagccttatgaatttcccaagacctgtccggcctgcggc
agccacgccatccgagagaacggcgaggtcgtcacgcgctgcaccggcgcgctgatctgt
ccggcgcaggcggtcgaacggctgaagcatttcgtctcgcggctggctttcgacatcgac
gggctcggcgacaagcagatccaggaattctatgacgacggcctgatcatgcatccggtc
gacatcttcacgctgcagaagcgcgatgagcgttcctcgaagaagatcatcgaccgcgaa
ggctttggtgaagtctcggtacgcaatctgttttccgctatcgacaacaggcgcaagatc
gagctcaatcggttgatcttcgcgctcggcatccgccacatcggcgagggcaacgcgaag
ctgctggcgaagcattacggcagttttgccgcgttccgcgacgcgatgctggccgccgcg
gccgggcagaccgccgagggcaacaattcggaggcctggcaggacctcaacaatatcggc
ggcgtcggcgagatcgtcgcggacgcggtggtcgagttcttcgccgagacgcgcaatgtc
aaggcgctcggcgaactgctcgacgaaatcgaggtgctagatgtcgagcaggcgaagagc
gacacagcgatcgccggcaagatcgtcgtgttcacgggatcgctgaccaaattcacccgc
gacgaggccaaggcccgcgccgaacggctcggcgccaaggtcgccggctcggtgtcgaag
aagacggattatgtagtcgccggcgaagatgccggctcgaagctgaagaaggcgacggag
ctgggtgttacggtgctgaccgaagacgagtggctgaagctgatcgagggataa
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