Trichosporon asahii var. asahii: A1Q1_04228
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Entry
A1Q1_04228 CDS
T06566
Name
(RefSeq) integral subunit of the pre-mRNA cleavage and polyadenylation factor (CPF) complex, Pfs2p
KO
K15542
polyadenylation factor subunit 2
Organism
tasa
Trichosporon asahii var. asahii
Pathway
tasa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tasa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
A1Q1_04228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tasa03019
]
A1Q1_04228
Messenger RNA biogenesis [BR:
tasa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
A1Q1_04228
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WDR55
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_Aladin
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_SCAP
PEP5_VPS11_N
WD40_RFWD3
Beta-prop_DCAF12
Ge1_WD40
Beta-prop_Vps41
Beta-prop_SPT8
B-prop_COPA_B_2nd
Motif
Other DBs
NCBI-GeneID:
25987741
NCBI-ProteinID:
XP_014178080
UniProt:
J4U8X8
LinkDB
All DBs
Position
Unknown
AA seq
699 aa
AA seq
DB search
MEDLLPFEPRDHMGHELGFDVVGRSQRQYPLDPLSRPRFSPHSPPTMVAASANPEEAGPS
RTRAPDSWRPEKYLEPNHPDNEEVLEQAAYQAAVTRPPGDARANRKYKPRRTVDYMGGVQ
KWRMLGKIKGMRDYMPPIHPNPSDIINLLPPAAHIRDTSTSICDYFVHTSINKERSPTRV
VKWTPDARRLLTGNDKGQFTLWNGASFNYESITQVHDDSIRAMSYSHNGQALVSTDKSGW
IKYFTPHLTNIHGFQGHREACHGVAWSPNNEWFVTGGDDGLVKIWNYRAAETERELSGHG
WDVRCVDWHPTKGLVVSGSKDMLVKFWDPRTGKDLSTLHSHKAVINACTWNPDGNIVATA
GGDNVIRLFDIRTFRELESMKGHTKEVNCLEWHPIHHSLLCSGDAAGSIAYWSLQAPDPS
KPVTMMENAHDDAVFSVSFHPLGHILCSGSKDFTARFWCRARPAGGHETDKYHLGEEGAM
RAEQAQATSKWPGLPPPGESLPGLPGLGAPPAKNSPTPSRTVTPSGPPGLGGPPGLGELP
GLGPGRSRRDLDRQGGGGGGGGGFGGPGTGANAGAGGGPGGYGAYPPAPAGYGNGPNAQN
GYGRQQGGYGAGPGGGQGPPGGYGQQGGQGGYQQGGQGGYGQGGQGGYQQGGGGGYGQGG
GSRGAAGTAAGGRGSLEGTMHSSVQTGLAQREISCSARS
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggaggatttgcttccgttcgagccccgcgaccatatgggacatgaacttgggtttgac
gtagttggccgatcccaacgacaataccccctcgatccactctctcgacctcgcttctca
cctcacagcccaccgacaatggtagcggcatctgcaaacccggaggaggctggcccctcg
cgaacgcgggccccggactcttggcgccccgagaagtatttggagccgaaccacccggat
aatgaagaggtcctggagcaggctgcgtaccaggctgcggtgacgagaccgccaggcgat
gcgcgcgccaaccgcaagtacaagcctagaagaacagtcgactacatgggaggtgtccag
aaatggcgcatgttgggcaagatcaagggtatgagagactacatgccgccgatacacccc
aatccaagcgatatcatcaacctccttccgccagctgcacacattagagatacgtcgacg
tccatctgtgactactttgttcacacctcgatcaacaaggagcgctctccgactcgagta
gtgaagtggacgccagatgctcgtcgtcttctcacgggcaatgacaagggccagttcacg
ctgtggaacggtgcctcgttcaactacgagtcgattacgcaggtgcacgacgactcgatc
cgtgcaatgtcgtactcgcacaacggccaagctctggtctcgacggacaagtcgggctgg
atcaagtacttcaccccgcacctgacgaacatccacggcttccagggacatcgtgaggct
tgtcacggtgttgcgtggtcgccgaataacgagtggttcgtgactggcggcgacgatggt
ctcgttaagatctggaactaccgagcggcggagacggagcgcgagctgtcggggcacgga
tgggatgtgcgctgcgtggactggcatcctacgaagggtctggtcgtgtcgggctcgaag
gacatgctcgtcaagttctgggacccgcggacgggcaaggacctctcgacgctccattcg
cacaaggcagtcattaacgcgtgcacttggaacccggacggcaacattgtcgcgaccgct
ggcggagacaacgtcatccgcctcttcgacattcgcactttccgcgagctcgagtccatg
aagggtcacacgaaggaggtcaactgtctcgagtggcacccgatccaccactcgctcctg
tgctcgggcgacgcagcgggcagcatagcgtactggtcgctgcaggcgccggacccttcg
aagcctgtcacgatgatggagaatgcgcacgacgacgccgtgttctcggtctccttccac
cccctcggccacattctttgctcgggcagcaaggactttacggcgcggttctggtgccgc
gcccgtccggccggaggtcacgagacggacaagtatcacttgggagaggagggcgcgatg
cgtgccgaacaggcccaggcgacgagcaagtggccgggtcttcccccgcctggcgagtcg
cttcccggtctgccgggtctcggtgcgccgccggcgaagaacagcccgacgccgtcgcgc
accgtcacgccgtccggccccccgggtctcggcggaccaccaggactgggcgagctgccc
ggcctggggcccggacgcagccgccgcgacctcgatcgtcaaggcggaggcggcggagga
ggaggtggcttcggcggacctggtactggagccaacgccggcgcaggtggcgggccagga
gggtacggcgcgtatccccccgctccggctggatatggcaacggtccgaacgcgcagaac
ggctacggacgacagcaaggtggatacggcgctggtcctggcggtggccagggtcctccc
ggtggctatggacagcagggaggacaggggggataccagcaaggcgggcagggaggttat
ggccaaggaggccagggcggatatcagcagggaggcggcggtggatacgggcagggaggg
ggcagccggggggcagccggtacggcggccggcggtagaggcagtctagagggaacaatg
catagtagtgtacagacagggttagctcagcgggaaatctcgtgctcggcgaggagctga
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