Trichosporon asahii var. asahii: A1Q1_07724
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Entry
A1Q1_07724 CDS
T06566
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tasa
Trichosporon asahii var. asahii
Pathway
tasa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tasa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A1Q1_07724
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tasa03019
]
A1Q1_07724
03041 Spliceosome [BR:
tasa03041
]
A1Q1_07724
03009 Ribosome biogenesis [BR:
tasa03009
]
A1Q1_07724
03016 Transfer RNA biogenesis [BR:
tasa03016
]
A1Q1_07724
Enzymes [BR:
tasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A1Q1_07724
Messenger RNA biogenesis [BR:
tasa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
A1Q1_07724
Spliceosome [BR:
tasa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
A1Q1_07724
Complex C
U4/U6.U5 tri-SnRNP related factors
A1Q1_07724
Ribosome biogenesis [BR:
tasa03009
]
Eukaryotic type
Pre-60S particles
Helicases
A1Q1_07724
Transfer RNA biogenesis [BR:
tasa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
A1Q1_07724
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
MTR4-like_stalk
DEAD
Helicase_C
DEXQc_Suv3
nSTAND3
BssB_TutG
Motif
Other DBs
NCBI-GeneID:
25991236
NCBI-ProteinID:
XP_014182211
UniProt:
J6F2D6
LinkDB
All DBs
Position
Unknown
AA seq
981 aa
AA seq
DB search
MARASAAAGPSTPRKKTKKRAAEDGTPAAKKTKAPRIDDEEAQEEPAQNDDPMAALEEAQ
KDPMETLDENLKGETSEDGPVEESKDGHIPGQAPVRADEYELKAEREVDASKGLGGGHAA
DEGKLKLVHEVRHQVAIPPGFPYVPISQHKRLDPPARTYKFELDPFQYVATSCIERSETV
LVSAHTSAGKTVVAEFAIATALKSGMRVVYTSPIKKFRDFQEDFGQENVGLMTGDVTINP
TASCLVMTTEVMREVGWVIFDEVHYMRDKERGVVWEETLILLPHKVRCVFLSATIPNSME
FAEWWCQTHEQPCHIVYTDFRPTPLQHYLFPAGSEGIYLVVDERSNFREDNFQKAMAALA
AGQGEDPADPNSGRNKKGKTKKGGAMKGGVSDIYKIVKLIMSRNLNPVIIFAFSKRECEA
LAMQMSKLDFNTEDEAATVQQVFENAIGALSEDDRKLPQIEQILPLLKRGIGIHHGGLLP
ILKEVIEILFQEGLLKALFATETFSIGLNMPAKTVVFTSVRKFDGKEFRTLSGGEYIQMS
GRAGRRGLDARGIVIMMCDEKIEPEAAKGMVKGQADRLDSAFHLGYNMIINLMRVEGISP
EYMLERCFYQFQNSLSVPVLEKQLKAAEEERDEIKIEDEDDIAEYYDLRDQLKVLEGDFK
SVITHPQYVLPFMQPGRMVEIRDGGRDFGWAVVVGYNKVVNPKGRPPIVTENDPPQKGYV
IDVLVKVASGSQVPRDKNAEGIQPPGPGDNGETAIIGVLLSTVQAVSTVRLHLPKDLRSQ
SDKDTAFRAVNEVKKRFPKGIALLDPVVNMGIKDDSFKKLVKDRIQTLPITSSPDLPQKY
DEYDRKQKAIASEKSEAKVKIREELAAPLRVLQETARRIAKVSNESKIPVVEDEYVQSFK
VEMMEPVLQWCKGASFAELCKLTDVYEGSIIRCFRRLQELLRQMGQAANAIGNKELEEKF
TKALEMLEKPNSIIFSPSLYL
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggccagagcatcagccgctgccggcccctcgacaccgaggaagaagacgaaaaagcgt
gccgccgaagatggtacgcccgccgccaagaagaccaaggcgccccggatagacgacgaa
gaagctcaggaggagccggcccagaacgacgatccgatggccgcgcttgaggaggcgcag
aaggacccgatggagacactcgatgagaacctcaaaggagagaccagcgaggacggacct
gtcgaggagtccaaggacgggcatattccgggacaggctcccgtgcgagcagacgagtac
gagctcaaggcggagcgtgaggtcgacgccagcaaggggctgggcggtggtcacgctgcg
gatgagggcaagctgaagcttgttcatgaagtcagacatcaggtcgccatccctcccggc
ttcccgtacgttccgatctcgcagcacaagcgtctcgacccgccggcgaggacgtacaag
ttcgagctcgacccgttccagtatgtcgccacctcgtgtattgagcgcagcgagactgtt
ctggtgtctgcgcacacgtctgccggtaagaccgtcgtcgccgagtttgccatcgccacc
gccctcaagtcgggcatgcgtgttgtctacacgagtcccatcaagaagttccgtgacttc
caggaggactttggacaggagaatgtcggtctcatgactggtgatgtgacgatcaacccg
actgcatcgtgtctcgtcatgacgacggaggtcatgcgtgaggtcggatgggttatcttc
gacgaggtgcactacatgcgcgacaaagagcgtggtgtcgtgtgggaggagacgctgatc
ctgctcccgcacaaggtgcgctgtgtgttcctgtccgccactattcccaactctatggag
tttgccgagtggtggtgccagacgcacgagcagccgtgtcacatcgtctacaccgacttc
cgaccgacaccgctgcagcactacctcttccccgctggctccgagggcatctacctcgtc
gtggacgagcgatcgaacttccgcgaggataacttccagaaggcgatggctgcgctcgct
gctggtcagggagaagaccccgccgacccgaactctggacgcaacaagaagggcaagacg
aagaagggaggcgccatgaagggcggagtgtccgacatctacaagatcgtcaagctgatc
atgagccgcaacttgaaccccgtcatcatcttcgccttctcgaagcgcgagtgcgaggcg
cttgccatgcagatgtctaagctcgacttcaacactgaggacgaggccgccactgtccag
caggtgttcgagaacgccatcggcgctctgtctgaggacgaccgcaagctgccgcagatt
gagcagattcttcctcttctcaagcgcggaatcggaatccaccacggtggtcttctcccc
atcctgaaggaggtcatcgagattctcttccaggagggtcttctcaaggcgctgttcgcc
accgagaccttctccatcggtctcaacatgcctgccaagactgtcgtgttcacctcggtc
cgcaagttcgatggcaaggagttccgtactctgtccggaggagagtacatccagatgtct
ggtcgtgccggtcgtcgtggtctcgacgcgcgtggtatcgtcatcatgatgtgtgatgag
aagatcgagcccgaggccgccaagggtatggtcaagggccaggcagaccgcctcgactct
gccttccatctcggctacaacatgatcatcaatcttatgcgtgtcgaaggtatcagcccg
gagtacatgctcgagcgctgcttctaccagttccagaacagcctgtccgtacctgtgctc
gagaagcaactcaaggctgccgaggaggagcgcgacgagatcaagatcgaggacgaggac
gacattgccgagtactacgacctccgcgaccagctgaaggtgcttgagggcgacttcaag
tctgtcatcacgcacccgcagtatgtcctgccgttcatgcagcccggccgtatggtcgag
attcgtgacggcggccgcgattttggctgggccgttgttgttggctacaacaaggtcgtc
aaccccaagggacgcccgccaattgttaccgagaatgacccgccgcagaagggttatgtc
atcgacgtccttgtcaaggtcgcctcaggatcgcaggttcctcgcgacaagaacgccgag
ggcatccagccccccgggcccggtgacaacggcgagaccgccatcatcggtgttctcctc
tccactgtccaggccgtctccactgtccgtctccacctgccgaaggacctccgctcgcag
tcggacaaggacactgctttccgcgctgtcaacgaggtcaagaagcgtttccctaagggc
attgcgcttctcgaccccgtcgttaacatgggcatcaaggacgactctttcaagaagctt
gttaaggaccgcatccagactttgcctatcacgtcatctcccgaccttccccagaagtac
gacgagtatgaccgcaagcagaaggcgatcgcgtccgagaagtccgaggcgaaggtcaag
attcgcgaggagctcgccgcgcccctgcgtgtgctgcaggagactgcccgccggatcgcc
aaggtctcgaacgagtccaagatccccgttgtcgaggacgagtacgtgcagtcgttcaag
gtcgagatgatggagccggtgctgcagtggtgcaagggtgcctccttcgccgagctctgc
aagctcaccgacgtgtatgagggtagcatcatccgctgcttccgccgcctgcaggagctg
ctgcgccagatgggccaggccgcgaacgcgatcggaaacaaggagctcgaggagaaattc
acaaaggctctcgagatgctcgagaagcccaactcgatcatcttcagcccgtccctgtac
ctctaa
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integrated database retrieval system
