Taylorella asinigenitalis 14/45: KUM_0539
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Entry
KUM_0539 CDS
T02603
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tat
Taylorella asinigenitalis 14/45
Pathway
tat03030
DNA replication
tat03410
Base excision repair
tat03420
Nucleotide excision repair
tat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KUM_0539 (ligA)
03410 Base excision repair
KUM_0539 (ligA)
03420 Nucleotide excision repair
KUM_0539 (ligA)
03430 Mismatch repair
KUM_0539 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tat03032
]
KUM_0539 (ligA)
03400 DNA repair and recombination proteins [BR:
tat03400
]
KUM_0539 (ligA)
Enzymes [BR:
tat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KUM_0539 (ligA)
DNA replication proteins [BR:
tat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KUM_0539 (ligA)
DNA repair and recombination proteins [BR:
tat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KUM_0539 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KUM_0539 (ligA)
MMR (mismatch excision repair)
DNA ligase
KUM_0539 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KUM_0539 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
BRCT_2
PTCB-BRCT
SAM_EPH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
CCG19336
UniProt:
I7JRA7
LinkDB
All DBs
Position
572296..574344
Genome browser
AA seq
682 aa
AA seq
DB search
MSEEDFSDYETLKTQIAEHDRAYYIEDNPKISDAEYDGLMRRLLEYESLHPEWVTPDSPS
QRVGGEALKIFNSVRHTVPMLSLGNVFNTEELTAFYNRMVEACGTRDIEFNCEPKFDGLA
ITLRYEQGLLKYAATRGDGQTGEDVTAQVKTIRTVPIKLNRPNEGTLPEVIEVRGEALMF
KRDFEKLVKFQQEQGVQTFANPRNAAAGSLRQLDPKVTSKRNLRFYAYGLGEFKSSNSKG
IFKNQSELLDYFLSLGFNVTEHREVVYGMEGLLGFFETMKEKREALPFDIDGVVYKVNDF
SLQKKIGYISKAPRFAIAHKFAAEQMQTKLLDIEVQVGRTGALTPVAKLEPVFVGGVTVQ
KATLHNEDEIARKNLMIGDTVIVRRAGDVIPEVMESLPELRPADARKFIMPTSCPVCGSA
VEKPEGEAVARCTGGLFCAAQVTQSIIHAVSRKALNIDGLGDKHIQKLVSSGKINHLDDL
YRLSVSDLNVLGRNAEESKLEVLAPTLHARIQSSKSTTLSRFLFALGIRHVGETTARDLA
KHFGDLQSIMTADTSKLSQVPNVGEVMADSIHNFFKEPHNREVIENLLTLGFELKAEEEN
ISINPAIAGHSFVVTGTLESWKRDEISQVIISAGGRISSSVSKKTDYLLIGSEPGDSKLK
KAQELGTEILTESEFKALLQKK
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagaggacttttcagattacgaaacccttaaaacccaaattgctgaacacgat
agggcttactatatcgaagacaatcctaagatttctgatgccgagtatgacggtctgatg
agaagattgctcgaatatgaatcattacatccagaatgggttactcctgattctccatca
caaagagtaggcggtgaagcactaaaaatatttaactcagtgcgtcacactgttcctatg
ctttctttggggaatgtatttaacactgaagaactgactgctttttataatcgcatggtt
gaggcctgcggcactagagacattgaatttaattgcgaaccgaaatttgatggtctagcc
attactttgcgatacgaacaaggtttacttaagtatgccgctacaaggggcgatgggcaa
actggagaggatgtaacggctcaagtaaaaactattcgtacagtgcctataaaattaaat
agaccaaatgagggaacattgccagaggtcattgaggttaggggcgaggccttaatgttc
aaacgcgattttgagaaattagttaaatttcaacaagagcagggcgtgcaaacctttgcg
aaccctagaaatgccgccgcaggaagtcttcgacaacttgaccctaaggttacctcaaaa
agaaatctacgtttttatgcttatggcttaggagagtttaaatcttctaattctaagggc
atttttaagaatcagagtgaacttttggattattttttgtctcttggttttaatgttaca
gagcatagagaagtggtctatggaatggaagggctacttggattttttgaaactatgaag
gagaaaagggaagcattgccatttgatatcgatggagtggtctataaggtgaacgacttc
tcacttcaaaaaaaaattggctatatctcaaaggctcctcgatttgccattgctcataaa
ttcgcagccgaacaaatgcaaacaaaacttctcgatatagaagttcaagttggcagaact
ggggctctcacaccagtagcaaaattagagcccgtatttgtgggtggggtaacggtacaa
aaagctactcttcataatgaggatgaaattgctcgcaaaaacctaatgataggtgataca
gttattgtgcgaagggcaggagacgtaatcccagaggtaatggagtcattgccagaattg
cggcctgcagatgcacgcaaatttataatgcctacgagctgcccagtatgtggatctgct
gtagaaaagcctgaaggtgaagcagttgcacgttgcacgggcgggctattttgtgcggca
caagttacacaaagcataattcatgcggtatctagaaaagccctaaatatcgatggttta
ggcgataagcatattcaaaaattagtcagcagtggaaagattaatcatttagatgattta
tatcgtttaagcgtctcagatttaaatgttttaggccgtaatgctgaggaatcaaaatta
gaagtcttagctccaactctgcacgcacgcattcaatctagtaaatcaactactctaagc
cgttttctttttgcattaggaattcgtcatgttggagaaactacagctagggatctagct
aagcattttggagatctgcaatctatcatgacagctgatacttcaaaattaagtcaggtc
ccaaatgttggagaagttatggcagattctattcataacttctttaaagagccacacaat
agagaagttatagagaatttattgactcttgggtttgaactaaaagctgaagaggagaat
atctctataaatcctgcaattgctggacatagctttgtagttacaggcacacttgagagt
tggaaaagagatgaaatttctcaagtaataatatccgcagggggacgcataagttcttct
gtttcaaagaaaactgattatttattaattggttcagagcctggagacagtaaacttaaa
aaggctcaggagctaggtactgaaattcttacagagagcgaatttaaggctttacttcaa
aaaaaataa
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