Thermosulfuriphilus ammonigenes: G4V39_04965
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Entry
G4V39_04965 CDS
T06469
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tav
Thermosulfuriphilus ammonigenes
Pathway
tav03030
DNA replication
tav03410
Base excision repair
tav03420
Nucleotide excision repair
tav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G4V39_04965 (ligA)
03410 Base excision repair
G4V39_04965 (ligA)
03420 Nucleotide excision repair
G4V39_04965 (ligA)
03430 Mismatch repair
G4V39_04965 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tav03032
]
G4V39_04965 (ligA)
03400 DNA repair and recombination proteins [BR:
tav03400
]
G4V39_04965 (ligA)
Enzymes [BR:
tav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G4V39_04965 (ligA)
DNA replication proteins [BR:
tav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G4V39_04965 (ligA)
DNA repair and recombination proteins [BR:
tav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G4V39_04965 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G4V39_04965 (ligA)
MMR (mismatch excision repair)
DNA ligase
G4V39_04965 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G4V39_04965 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
HHH_3
MAM33
UPF0758_N
Mustang
YiiM_3-alpha
HhH-GPD
BRCT_2
DUF4796_N
Zn_ribbon_NUD
Zn_ribbon_RlmA
Motif
Other DBs
NCBI-ProteinID:
QIJ71660
UniProt:
A0A6G7PVL5
LinkDB
All DBs
Position
1014648..1016675
Genome browser
AA seq
675 aa
AA seq
DB search
MAVPREIVERVKKLREEINYHNYRYYVLDSPVISDAEYDALMRELKELEEKYPELITPDS
PTQRVGFAPAEEFRQVPHSVPMLSLDDAFTEEEVLEFDRRLKRFLNLPEDEEIDYTCEPK
IDGLAVDLVYENGLFTVGSTRGDGYVGEDVTNNLKTIKSIPLRLLSLDGVPIPRRLDVRG
EVYMDKDRFRELNRQRLEQGEPPFANPRNAAAGSLRQLDPNVTARRPLDIFCYGVGLVEG
YTFRSQWEILTTLPKWGFRVNPHVRLVKGIRAAIEYHREMDRLRERLPYEIDGVVIKVND
LELQERLGTKARSPRWALAFKFEPTQATTQVLDIIVSVGRTGAVTPVAILKPVKVGGVIV
SRATLHNEDEVRRKDVRVGDWVLVQRAGDVIPEIVSVIKERRTGQERPFQMPRHCPICGS
KLVRKPGEAIWRCPNKNCYAQLVRSVIHFASKGAMDIEGLGEKVAKLLVDMGLVRDVADI
YQLKEEDLEQLPGFARKKAQNLIRAIEKSKETTLARFIYALGIRHVGEVTAQILAEHFKS
LDRLMEARLEDLLSIEGIGPEVATSIVEYFRDKHNRERIRRLLEAGIHFKEAEKKPQEKP
LAGMTFVFTGALSSMTREEAKRRVQELGGRVGSSVSRQVDYVVVGERPGSKYERARRLGV
RTISEEEFLKLIGQA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggccgtccccagggagatcgtcgaacgggtcaaaaaactccgggaggagatcaactac
cacaattaccgctactacgtcctggattccccggtgatctccgacgccgaatatgacgct
ctaatgcgggagctaaaggagctggaggaaaagtaccccgagcttataacgccagactca
cctacccagagggtaggctttgccccggccgaagagttccgtcaggtgcctcactcggtc
cccatgctctccctggacgatgccttcaccgaagaggaggtcttggagtttgaccgccgc
ctaaaacgcttccttaaccttcctgaagacgaagagatcgactacacctgtgagcctaaa
atagacggcctggcagtggatcttgtctatgagaatggccttttcaccgtgggctccacc
cggggagacggctatgtaggcgaagatgtgaccaacaacttaaagaccataaaatctatc
cccttaaggcttctcagcctggatggtgtccccattccccggcggcttgatgttcggggt
gaagtttacatggataaagaccggttcagagaacttaaccgccaaaggctggagcagggg
gagccgccctttgctaacccgcgtaacgctgctgccggttctctgcgccagctggacccc
aacgttaccgccaggaggccccttgacatcttctgctatggggtggggctggttgaaggc
tataccttcagaagccagtgggagatcctgaccacactgcccaagtggggattccgggta
aaccctcatgttcgtctggtaaagggtatcagggcggccatcgaataccatcgagagatg
gatcgcctaagggagaggctcccctacgagatcgacggtgtggtcattaaggtcaacgat
cttgagcttcaggaacgcctggggaccaaggcccggagcccccgttgggcgttggccttc
aagtttgaacccacccaagccaccacccaggtgctggatattatcgtcagcgtcggccgg
accggggccgtaaccccggtggctatcctcaaaccagttaaggtagggggggtaattgtc
tcccgggccacccttcacaacgaagacgaagtccgccgtaaggatgtccgggtgggagat
tgggtgctggtccagcgggcgggagacgttattccggagattgtcagtgtcatcaaggaa
cgccgtaccggtcaggagcgtcccttccagatgcctcgtcactgccccatctgcggctca
aagctggtccgcaaacccggcgaggccatctggcgatgtcccaacaaaaactgctatgcc
cagctggttcgctccgtcattcacttcgccagcaaaggagccatggacatcgagggcctg
ggagagaaggtggccaagctcctggtagatatgggccttgttcgggacgtagccgatatt
tatcaactcaaggaagaagacctggagcagcttccagggtttgcccgaaagaaggcccaa
aatctcatccgggccatagaaaaaagcaaagaaaccaccctggcccgattcatttacgcc
ctgggaatcaggcacgtaggggaggtcacagcccagatcctggccgaacacttcaaaagc
ctggatcgccttatggaggcccgcctggaagaccttctctccattgagggaattggtccc
gaggtggccacctccattgttgaatatttccgagacaaacacaatcgagaacgcatccga
cgcttgttagaggcaggtatccatttcaaagaggccgagaaaaaaccacaagaaaagccc
ctggccggcatgacctttgtcttcactggagccctctcctcgatgaccagagaagaggcc
aaacgtcgagtccaggagctgggaggtcgggtgggctcttcggtttctcgccaggtggat
tatgtcgttgtaggcgagagaccgggttctaaatacgaacgggcccgacgcctgggtgtc
cgaaccattagtgaggaagaattcttaaagctaatcggacaggcctag
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