Tamlana sp. s12: JJL45_13045
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Entry
JJL45_13045 CDS
T10518
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tay Tamlana sp. s12
Pathway
tay03030
DNA replication
tay03410
Base excision repair
tay03420
Nucleotide excision repair
tay03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JJL45_13045 (ligA)
03410 Base excision repair
JJL45_13045 (ligA)
03420 Nucleotide excision repair
JJL45_13045 (ligA)
03430 Mismatch repair
JJL45_13045 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tay03032
]
JJL45_13045 (ligA)
03400 DNA repair and recombination proteins [BR:
tay03400
]
JJL45_13045 (ligA)
Enzymes [BR:
tay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JJL45_13045 (ligA)
DNA replication proteins [BR:
tay03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JJL45_13045 (ligA)
DNA repair and recombination proteins [BR:
tay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JJL45_13045 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JJL45_13045 (ligA)
MMR (mismatch excision repair)
DNA ligase
JJL45_13045 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JJL45_13045 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Auto_anti-p27
HHH
Motif
Other DBs
NCBI-ProteinID:
QQY81837
LinkDB
All DBs
Position
complement(3030704..3032704)
Genome browser
AA seq
666 aa
AA seq
DB search
MNTVEQEIKRLRDELNAYNYSYYVLDQKEISDYDFDLKLKTLQDLELKHPEFFDSNSPTQ
RVGGEVTKNFETIIHEHRMYSLDNSYSKEDLQDWENRIKKMVDGEIEYACELKYDGASIS
LTYENGVLVKAVTRGDGFQGDNVTANVKTIKSVPLRLKGDFPDKFDIRGEIILPFDGFNK
MNEERIEIGEEPYRNPRNTASGSLKLQDSAEVAKRPLECLLYNITGNNLGISSQIESLEK
ARQWGFKVPDASKLAHSIDDVLEFVNYWDKNRHHLAYETDGVVIKVNSLQHQEELGYTAK
APRWAMAYKFKAEQVSTKLNSISYQVGRTGAITPVANLQPVELAGTTVKRASLHNADQIE
KLDIRVGDEVYVEKGGEIIPKILGVDLLKRVPESTPTQYITHCPECSTPLVRQDGEAQHY
CPNYNGCKPQVIGRIQHYISRKAMDIDGLGGETVALLVNEHLISNYADLYTLTKEQIVPL
ERMAEKSADNLIKGIEQSKNIPFERVLFALGIRYVGETVAKKLAKHYKSIDAIMVASQED
LVAVDEIGVKIAESVRLFFDAEENVHIVNRLKDFGVQLEMSEEQLKGQTELLKGDIVVIT
GVFEKVSRTELKKLIEDNGGKVSSSISSKTSYIVAGANMGPSKKEKAEKLGVLLISEDEF
LHKVGV
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaatacagttgaacaagaaataaagcgtctgcgcgacgagttaaacgcttataattac
agttattacgttttggatcagaaggagatatcggattacgattttgatttaaaactgaaa
acgcttcaagatttagaattaaaacatccagagttttttgattcgaactcgccaacacaa
cgggtaggcggagaagtcaccaaaaattttgaaaccataattcatgaacatcgcatgtat
tctttagataattcgtattctaaagaagatttacaagattgggaaaaccggataaaaaaa
atggttgatggcgagattgagtatgcttgtgaattaaaatatgatggcgcttctattagt
ttaacttatgaaaacggggtgttagttaaagctgtgacgcgtggtgacggatttcaaggt
gataacgtgacggccaatgtaaaaaccataaaatcggtgcctttacgattgaaaggtgat
tttcctgataaatttgatatccgaggagaaataattttaccttttgatggctttaataaa
atgaatgaagagcgcattgaaataggtgaggagccttatagaaacccgaggaacacggcc
tcagggagtttaaagcttcaggatagtgccgaggtagctaaacgtccattagagtgtttg
ttgtataatatcactggaaataatttaggcatttcttctcaaattgaaagtttagaaaaa
gcaagacagtggggatttaaagtaccagatgcgtctaaattagcccattccattgatgat
gttttagaatttgtaaactattgggataaaaaccgacatcatttagcttatgaaaccgat
ggcgtggtgatcaaagttaatagtttacagcaccaggaagagcttggttataccgcgaag
gccccgcgctgggctatggcttataagtttaaagccgagcaagtttcaacaaaattaaac
agtattagttatcaagttggaaggacgggagctataactccggttgccaatttacaacct
gtcgaactggccggaacaacagtaaaacgtgcttccttgcataatgccgatcaaattgaa
aaattagatataagagtaggcgatgaagtttatgttgaaaagggcggtgagatcattcca
aaaattttgggagttgatttacttaaacgtgttccagaatcgacccctacacaatatata
acgcattgtccggaatgtagcacgcctttggtacgtcaagatggagaagcacagcattac
tgtcctaattataatggatgtaaaccacaggtaattggcaggattcagcattatatatct
agaaaagcgatggatattgatggcttgggtggtgaaacagtagccttgttagttaatgag
catttaatttcaaattatgccgatttatatacgttaacaaaagagcaaatagtgcctttg
gagcgtatggctgaaaaaagtgctgacaatttaattaaaggtattgaacagtctaaaaat
attcctttcgaacgtgttttatttgctttaggtattcgttatgtaggtgaaacggtggct
aaaaaattagcgaaacattacaagagtattgatgctattatggttgcttctcaagaagat
ttagttgccgtggacgaaataggtgttaaaatcgctgaaagtgttcgtttgttttttgat
gccgaagagaacgtgcacattgtaaaccgattaaaagactttggtgtacaattagaaatg
agtgaggagcagttaaaaggtcaaacagaattgcttaaaggagacatcgttgtcattaca
ggtgtttttgaaaaagtgtctagaacagagcttaaaaaacttattgaagataacggtgga
aaagtgagtagttcgatttcatctaaaaccagttatattgtagcaggagcaaatatgggg
cctagtaaaaaggaaaaagctgaaaaattgggcgttttattaatttctgaggacgaattc
ttacataaagttggagtctag
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