Leadbettera azotonutricia: TREAZ_0569
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Entry
TREAZ_0569 CDS
T01506
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
taz
Leadbettera azotonutricia
Pathway
taz03030
DNA replication
taz03410
Base excision repair
taz03420
Nucleotide excision repair
taz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
taz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TREAZ_0569 (ligA)
03410 Base excision repair
TREAZ_0569 (ligA)
03420 Nucleotide excision repair
TREAZ_0569 (ligA)
03430 Mismatch repair
TREAZ_0569 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
taz03032
]
TREAZ_0569 (ligA)
03400 DNA repair and recombination proteins [BR:
taz03400
]
TREAZ_0569 (ligA)
Enzymes [BR:
taz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TREAZ_0569 (ligA)
DNA replication proteins [BR:
taz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TREAZ_0569 (ligA)
DNA repair and recombination proteins [BR:
taz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TREAZ_0569 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TREAZ_0569 (ligA)
MMR (mismatch excision repair)
DNA ligase
TREAZ_0569 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TREAZ_0569 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
HHH_3
HHH
IMS_HHH_1
PTCB-BRCT
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AEF82006
UniProt:
F5YBK8
LinkDB
All DBs
Position
1904249..1906258
Genome browser
AA seq
669 aa
AA seq
DB search
MKNDRIAALERLIKKYQDSYYNGEAEISDAEFDLLWDELRSLDPGNALLKKVGADGQGPD
PDGFPKARHLIPMGSQDKAANPEEFRSWAKKMGMETEKEGVKAETSLTPDLFGLTKIFLV
QFKLDGASLELQYEKGKLRAAVTRGDGVTGDEITHNALAMSGVVAELKSPFTGGVRGEVV
MPHEIWKKKYPDKANCRNAANGIMRRKDGMGCEDLKLVTYDAAATGDDAYFTDELEKIAW
LKKQGFETTDTKTFSDIEDIIAYRDEIAAKREKLPVDIDGLVIKDRATDMTDLRRARPEH
QIAFKFELETAYSILRQVEWSESGATYTPIGIVDPVRLAGTTVKRANLNNPDMIRAMGLK
IGSAVSVVKRGEIIPKIEGLAPEGALEEGEEKSEIEFPSKCISCGTDLIDGGTRLYCPNA
ACPKRLVHRVEKWVSVLGIMELGEKLLARMFAKGNVRQIGDLYTIEAAELAEFERMGEAS
AAKVVRHIRTKRELSLAAFVAGFDFEGVGETIMDKVAAAGIDTLEKLREASVADLAAVYG
LGDITAKTIADGVKECSAEMDRILGFNIIAIAPPPSSDSIPLKGLSFCFTGELASMKRNE
AEEKIKTLGGSAKSSVVKDLSFLVTNDTESGSAKNKKANDLGVPILDEEEFLALLKNPQL
AGEYRNKGH
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacgatcgtattgccgctttggaacggctgattaaaaaataccaggactcttat
tataacggcgaggccgaaatttcggatgccgagttcgatctcctctgggacgaattaaga
tcccttgacccaggaaatgcccttcttaaaaaagtaggcgccgacgggcaggggcctgac
cccgacggctttcccaaggcacggcacctcattcccatgggaagccaggataaggccgca
aaccccgaagaattccgttcctgggcgaaaaaaatggggatggaaacggaaaaagagggg
gtaaaagcggaaacttcgttaacccctgatttattcgggttaacgaaaatatttcttgtc
cagttcaagctggacggcgccagccttgaattgcagtacgaaaagggaaagctcagggcg
gcggtaaccaggggcgacggtgttacaggggatgaaattacccataatgccctggctatg
tcgggggttgtggcggaattgaaaagcccctttaccggcggagtccggggcgaagtagtc
atgccccatgaaatctggaaaaagaaatacccggacaaagccaattgccgcaacgcggcc
aacggcatcatgcgccgcaaagacggcatgggctgcgaagatttaaaacttgtgacctac
gatgctgcggccaccggggacgacgcatattttaccgacgagcttgaaaaaatcgcctgg
cttaaaaaacagggctttgagacaacagataccaaaaccttttcggacatcgaggacatt
attgcctatcgtgatgaaatcgccgccaagcgggaaaagctgcctgtggacatagacggc
ctggtgattaaagacagggccacggacatgacagatctccgcagggcaaggcccgagcat
cagatcgcttttaaatttgaacttgaaacagcctacagcattttgcgccaagtggaatgg
agcgaatcaggcgcaacctacaccccaatagggattgtcgatcctgtgcgcctcgccggc
actaccgtaaaaagggccaacctcaataatcccgacatgatacgggccatgggcttaaaa
atcggctctgctgtctctgtggtcaagcggggcgaaatcatcccgaaaatagagggcctt
gcgcctgagggcgctttggaggaaggggaggaaaaatccgaaatcgaatttccctctaaa
tgcatctcatgcggcacagacttgatagacggcggaacaaggctgtactgccccaacgcg
gcctgccccaagcggctggtccacagggtggaaaaatgggtttctgttttggggatcatg
gaactgggcgaaaaactccttgcccggatgtttgcaaaagggaacgtaaggcagattggg
gatctctacaccatagaagcagcagagcttgcagaattcgagcgcatgggcgaagcgtcc
gccgcaaaggtggtgcgccatatccgaaccaaaagagagctatcccttgctgcctttgtg
gcgggcttcgattttgaaggggtaggcgaaacgatcatggacaaggtggcagccgccggc
atagatactctcgaaaaactccgggaagcctcggttgcggatctcgccgctgtctacggc
cttggggacatcaccgccaaaaccatagccgatggtgtaaaagaatgttctgccgaaatg
gacaggatattgggcttcaacatcattgctattgcgccccccccttcgtccgattcaatt
ccccttaaaggtctcagcttttgcttcaccggggagcttgcatccatgaagcgcaacgag
gcagaggaaaaaatcaaaaccctggggggatcggcaaaatcctcggtggtcaaggatctc
tctttcctggtgactaacgatactgaatcggggtcggccaaaaacaagaaagccaatgac
ttgggcgtgcccatactggacgaggaggaattcctcgctctattgaaaaacccgcagctt
gcaggggagtacagaaataaaggccattaa
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