Thiobacillus denitrificans: Tbd_0624
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Entry
Tbd_0624 CDS
T00275
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tbd
Thiobacillus denitrificans
Pathway
tbd03030
DNA replication
tbd03410
Base excision repair
tbd03420
Nucleotide excision repair
tbd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tbd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Tbd_0624
03410 Base excision repair
Tbd_0624
03420 Nucleotide excision repair
Tbd_0624
03430 Mismatch repair
Tbd_0624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tbd03032
]
Tbd_0624
03400 DNA repair and recombination proteins [BR:
tbd03400
]
Tbd_0624
Enzymes [BR:
tbd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Tbd_0624
DNA replication proteins [BR:
tbd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Tbd_0624
DNA repair and recombination proteins [BR:
tbd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Tbd_0624
NER (nucleotide excision repair)
GGR (global genome repair) factors
Tbd_0624
MMR (mismatch excision repair)
DNA ligase
Tbd_0624
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Tbd_0624
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AAZ96577
UniProt:
Q3SL40
LinkDB
All DBs
Position
655939..657999
Genome browser
AA seq
686 aa
AA seq
DB search
MADRDVQARAAALRREIERHNYAYYVLDAPTIPDAEYDRLYHELEALEAAHPELVAADSP
TRRVGGQPLAGFKPVRHAVPMLSIRTETDTTAAGARAFDVRVRKELGLAPADPPVEYAAE
LKFDGLAINLRYEAGVLVAAATRGDGETGEDVTQNVRTVRTIPLRLHGDAPPAVLEVRGE
VFMRRDDFERYNAQQRAAGKPTLVNPRNGAAGSIRQLDPAIAGQRPLSFYAYGLGEVVGW
PDAPATHGATLDALQGLGVPVSAERCVCNGVDDLIAFHDDIAARRDQLPFDIDGVVYKVN
AFALQRELGFLTREPRWAVAHKYPAQEQLTTVLGIGVHVGRTGALTPVARLAPVFVGGVT
VTNATLHNQDEIDRKDTRVGDTVIVRRAGDVIPEIVATVLERRPQPEPPRFNILQSYPVC
PECGSHVVRLEGEAVARCTGGLYCPAQRKQALLHFASRRAMDIDGVGEKLVDQLVSRELV
RTPADLYRLPLETLAGLERMAEKSARNLIQAIETSKSTTLARFIYALGIRNVGETTARDL
ARHFGALDALLGANETALLGVRDVGPIVAQSIAQFFAEPHNLEVVGKLRALGVHWPETTG
MQQSGGILSGKTLVLTGTLPALTRDQAKERIESAGGKVAGSVSKKTDYVVAGEEAGSKLA
KARELGVTILDEEELLALLGSNKKNG
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggccgaccgcgatgtgcaggcgcgcgccgccgcgctgcgccgcgagatcgagcgccac
aactacgcctactatgtcctcgacgcgccgaccattcccgacgccgagtacgaccggctc
taccatgaactcgaagcgctcgaagcggcgcatcccgagcttgtcgccgccgactcgccg
acgcgccgcgtcggcggccagccgctggccggcttcaagccggtgcggcacgcggtgccg
atgctgtcgatccgtaccgagaccgacaccacggctgccggggcgcgtgccttcgacgtg
cgggtgcgcaaggaactcggcctcgcgcctgccgacccgcccgtcgaatacgccgcagaa
ctgaaattcgacggcctcgccatcaacctgcgctacgaggcgggcgtgctcgtcgcggcc
gcgacgcgcggcgacggcgaaaccggcgaggacgtcacgcagaacgtgcgcacggtgcgc
acgattcccctgcgcctgcacggcgacgcaccgcctgcggtactcgaggtgcgcggcgag
gttttcatgcgccgcgacgacttcgaacgctataacgcgcagcagcgcgccgccggcaag
ccgacgctcgtcaaccccaggaacggcgcggcgggcagcatccgtcaactcgatccggcg
atcgcgggtcagcggccgctgtccttctacgcctacgggctcggcgaggtcgtcggctgg
cccgatgccccggcgacgcacggcgcgacgctcgacgcgctgcaggggctcggggttccg
gtcagcgccgagcgctgcgtctgcaacggggtcgacgacctgatcgctttccacgacgac
atcgccgcgcgtcgagaccagttgccgttcgacattgacggcgtcgtctacaaggtgaac
gcgttcgccttgcagcgcgaactcggttttctgacgcgcgagccgcgctgggcggtggcg
cacaagtatccggcgcaggaacagctcaccacggtcctcggcatcggcgtccacgtcggc
cgcaccggcgcgctcacgccggtcgcccggctcgcgccggtgttcgtcggcggggtcacg
gtcaccaacgcgacgctgcacaaccaggacgaaatcgaccgcaaggacacgcgcgtcggc
gacaccgtgatcgtgcgccgcgcgggcgacgtcatccccgaaatcgtcgcgaccgtgctc
gagcgccggccgcagcccgagccgcctcgcttcaacatcctgcagagctatccggtctgc
cccgagtgcggctcgcacgtcgtccggctcgagggcgaagccgtcgcgcgctgcaccggc
ggcctctactgcccggcccagcgcaagcaggcgctgctgcatttcgccagccggcgggcg
atggacatcgacggcgtcggcgagaagctcgtcgaccagctcgtctcccgcgaactcgtg
cgcacgccggccgatctctaccggctcccgctcgagacgctcgccgggctcgagcgcatg
gccgagaaatcggcgcgcaacctgatccaagcgatcgagacgagcaagtcgacgacgctc
gcgcgcttcatctacgcgctcggcatacgcaacgtcggcgaaacgacggcgcgcgacctc
gcgcgccatttcggcgcgctcgatgcgctgctcggcgcgaacgagaccgctctcctgggc
gtgcgcgacgtcggccccatcgtcgcgcagtcgatcgcgcagtttttcgccgaaccgcac
aatctcgaggtcgtcggcaagctgcgcgcgctcggcgtgcactggcccgaaacaacgggt
atgcaacaatcagggggtatcctctccggcaagaccctcgtattgaccggaacgctgccg
gcgctgacgcgcgatcaggccaaggagcggatcgagtcggccggcggcaaggtggccggc
tcggtgtcgaagaagaccgactacgtcgtcgccggcgaggaagcaggcagcaagctcgcg
aaggcccgggaactcggcgtcacgatcctcgacgaagaggagctgttggcgctgctcgga
tcgaataaaaagaacggatag
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integrated database retrieval system
