KEGG   Trematomus bernacchii (emerald rockcod): 117469461
Entry
117469461         CDS       T09643                                 
Name
(RefSeq) RLA class II histocompatibility antigen, DP alpha-1 chain-like
  KO
K06752  MHC class II antigen
Organism
tben  Trematomus bernacchii (emerald rockcod)
Pathway
tben04145  Phagosome
tben04514  Cell adhesion molecules
tben04672  Intestinal immune network for IgA production
tben05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:tben00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    117469461
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    117469461
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    117469461
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    117469461
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tben04147]
    117469461
Exosome [BR:tben04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   117469461
  Exosomal proteins of epithelial cells
   117469461
  Exosomal proteins of breast milk
   117469461
SSDB
Motif
Pfam: C1-set MHC_II_alpha Ig_3 Ig_2 C2-set_3 I-set
Other DBs
NCBI-GeneID: 117469461
NCBI-ProteinID: XP_033969767
LinkDB
Position
Unknown
AA seq 236 aa
MMMMKIMLLFLCGVLCVSADVPHDALQFTGCSDSDGEYMMALDAEEMWHADFKAGKAVDA
QPSFVTDHINWPYEAAQGALQTCRFNLGTHRNIFKNVSLEKDPPSTPLLYTKQEVEMGEG
NVLVCHVTGFYPAPVSFFWTKNGENVTEGTSFPVPFLSKEGSFSQFSRLEFTPQLGDIYS
CGVQHLALDQPLTTFWEEQGSQPGVGPAVFCALGLTVGLLGVAAGTFFLIKGNECS
NT seq 711 nt   +upstreamnt  +downstreamnt
atgatgatgatgaagattatgctcctcttcctctgcggggtcctctgtgtttcagctgac
gttccacatgatgcccttcagttcaccggctgttcagactctgatggggagtacatgatg
gctctggatgcagaggagatgtggcacgctgacttcaaagcagggaaagcagtggacgct
cagcccagctttgtgacagatcatattaattggccttatgaagccgctcagggtgctcta
cagacctgcagattcaacctgggaacacaccgtaacatcttcaagaacgtctccctggag
aaagatcctccttccaccccgctgctctacaccaaacaggaagtggagatgggagagggg
aacgtcctcgtctgtcatgtgaccggtttctatccggctcctgtgagcttcttctggaca
aagaacggagagaacgtgactgaaggaaccagcttccccgttcccttcctctccaaagag
ggttccttcagccagttctcccgactggagttcaccccccagctgggagacatctacagc
tgtggggtccaacatctggctctggaccagccgctgaccacgttctgggaggagcagggg
tctcagcccggcgtgggaccagcagtcttctgtgctctgggtctgacggtgggtctcctg
ggagtggctgctgggaccttcttcctgatcaaagggaacgagtgcagctga

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