Trematomus bernacchii (emerald rockcod): 117471647 Help Entry 117471647         CDS       T09643                                  Symbol traf6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism tben  Trematomus bernacchii (emerald rockcod) Pathway tben04010   MAPK signaling pathway tben04120   Ubiquitin mediated proteolysis tben04140   Autophagy - animal tben04144   Endocytosis tben04620   Toll-like receptor signaling pathway tben04621   NOD-like receptor signaling pathway tben04622   RIG-I-like receptor signaling pathway tben05132   Salmonella infection tben05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:tben00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     117471647 (traf6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     117471647 (traf6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     117471647 (traf6)    04140 Autophagy - animal     117471647 (traf6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     117471647 (traf6)    04621 NOD-like receptor signaling pathway     117471647 (traf6)    04622 RIG-I-like receptor signaling pathway     117471647 (traf6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     117471647 (traf6)   09171 Infectious disease: bacterial    05132 Salmonella infection     117471647 (traf6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:tben04131]     117471647 (traf6)    04121 Ubiquitin system [BR:tben04121]     117471647 (traf6) Enzymes [BR:tben01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      117471647 (traf6) Membrane trafficking [BR:tben04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     117471647 (traf6) Ubiquitin system [BR:tben04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     117471647 (traf6) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 zf-C3HC4_4 zf-RING_5 TRAF6_Z2 U-box RING_XB3-XBAT31 Sina_ZnF TRAF3_RING zf-RING_11 Prok-RING_4 zf-TRAF_2 zf_UBZ DM Motif Other DBs NCBI-GeneID:  117471647 NCBI-ProteinID:  XP_033972679 LinkDB All DBs Position Unknown AA seq 571 aa AA seqDB search MACFGSNKGSLEEDSYDGPVGGELSDCMLAMLEKERESLPSPSESPGSSSISASLQAAAP IQGYDVEFDPPLESKYECPICLMALRNAIQTPCGHRFCKNCIEKSIRDAGQRCPVDNARL SEDQLFPDNFAKREILSLMVRCQNSGCANRMELRHLEKHLAKCEFATVPCPQCQQSVRQS QIEEHTTVECTRRPVSCPDCLACFVHEERELHEQQCPFASVKCQYCEMDLLRDQIESHCD ADCPKAPIACNFSTFGCKERMQRHNLAQHMQEFTQMHMRYMAEFLRGLSLNGTTPKSLWT LGPSVSSEDPAAGAAAAASACSGPRGAASCSSNFGPSPPTEEVQKLRDLDGRLVRQDHRL RELVIFKETQSDHIAELRRRVLSLEETVKELESQQCHGIFIWRLRGFSALLRNQEAGLPV VEHSPGFYTGRPGYKLCLRLHLQAPNAPRCSSYISLFVHTMQGAFDGQLTWPFQGTIRLT ILDQGPEGQHHMEVMETKPDLQAFQKPTIQRNPKGFGYVTFLHLHQLSQRAYVKDDTLLI RCEVTPRFDNVIHREGPAVQPRGPEATISRD NT seq 1716 nt NT seq  +upstreamnt  +downstreamnt atggcctgctttggaagcaataagggaagtttggaggaggacagctatgatggacctgtt ggtggagagctgtccgactgtatgttggcaatgctggaaaaggagcgagaatccctcccc agcccatcagagagccctggcagcagcagcatctctgcaagtcttcaggccgctgccccc atccagggctatgatgtggagtttgacccacccttagagagtaaatacgagtgccctatc tgcctcatggctttaaggaatgccattcaaacaccctgtggtcaccgtttctgcaagaac tgcattgagaagtctattcgtgatgcaggacagaggtgccctgtggacaatgcaagactg tcagaagaccagttgttcccggataactttgccaagcgggagattctgtcgctaatggtt cgctgtcaaaactctggctgtgctaacagaatggagctccgacatttggagaaacatttg gcgaagtgtgagtttgccacagtgccctgcccgcagtgccagcagtctgtgagacagagc cagatcgaggagcacacgactgtggagtgcacaaggaggcctgtgtcatgcccagattgt ctggcgtgctttgttcacgaggagagagagcttcatgagcagcagtgtccctttgccagt gtgaagtgccagtactgtgagatggatctcctcagagaccagattgaatctcattgtgat gcagattgcccgaaagcacccatcgcctgtaactttagcacctttggatgtaaggaaagg atgcagcgacacaacctggctcagcacatgcaggagttcactcagatgcacatgcgctac atggccgagttcctgcgtggcctcagcctcaatggcaccacacccaaatccctgtggacg ctaggaccatctgtttcctccgaggatccggcagcaggagccgcagcagcagcctcagcc tgcagcgggccccgaggagccgcaagctgcagcagcaactttggccccagtccgcctact gaggaggtccagaagctcagggacttggatggacgattggtaaggcaggatcaccggctg cgggagctcgtcatctttaaagaaacacagtccgatcacattgcagagctcaggcgcaga gtgttgtcgctggaggagacggtgaaggagctggaatcgcagcagtgtcacggtatcttc atctggcgccttagaggtttctccgccctcctgcggaaccaagaagcaggcctgcccgtg gtggagcacagccccggcttctacaccggtcgccccggctacaaattgtgcctgcgccta cacctgcaggccccgaacgccccgcgctgctccagctacatctccctcttcgtccacacc atgcaaggagcttttgacgggcagctgacgtggccgttccagggaaccatccgcctcacc atcctggaccagggcccagagggtcagcaccacatggaggtgatggagactaaacctgac ctgcaagccttccagaagcccaccatccagcgcaaccccaaaggattcggctacgtcacc ttcctgcacctgcatcagctgagtcagagagcctatgttaaagatgacactctgctcatc cgctgtgaggtcacaccgcgttttgacaatgtgattcaccgcgagggcccagcggtgcag cctagaggaccagaggccacaatttcgagagactaa

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