Trematomus bernacchii (emerald rockcod): 117472506
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Entry
117472506 CDS
T09643
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
117472506 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117472506 (kdm2ba)
04121 Ubiquitin system [BR:
tben04121
]
117472506 (kdm2ba)
03036 Chromosome and associated proteins [BR:
tben03036
]
117472506 (kdm2ba)
Enzymes [BR:
tben01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
117472506 (kdm2ba)
Transcription factors [BR:
tben03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
117472506 (kdm2ba)
Ubiquitin system [BR:
tben04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
117472506 (kdm2ba)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
117472506 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
117472506 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
PHD
LRR_4
Motif
Other DBs
NCBI-GeneID:
117472506
NCBI-ProteinID:
XP_033973627
LinkDB
All DBs
Position
Unknown
AA seq
781 aa
AA seq
DB search
MALSLSGDDEEYDSESEQQRAANRPKPKVGTSAAIKLPSNRSSSGARRRRTRCRKCEACV
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCKEAGKEDTLEEEEEK
FNFMLMECSICNEIVHPNCLKVNDASGVVNDELPNCWECPKCNHAGKSGKSPLALKQKRG
PGFKYASNLPGSLLREQKSLKEEGDASTAVKRRPDREETPRYRPEETLHRQPPLLSPSNL
PRPRPEDKLRKKRKLFDDDEEEDLGVRKKEKSDDPYYSKLLHHIKTEEEDEDPYEEEDEE
GRVPHFRGGVERRGRFVDPEDEADERDSRSSLLNPSVKTPFGDSDQSLCSSPQAGPSSEG
GSETQEKGPRRKARRKRRLPNRELSRELSKALNQEIQKTEDCLANENRQPLKVEPQTENE
EPKRLFRNELGDQRPHLKNKEMNGTPWELRHFYPSQITPLGFNRSTPTNRPVPPHSPPKC
VQMERHVIRPPPISPPPDRLPLKDGKSHVIQREVWMKIFGYLTHQELCVCMRVCKTWNRW
CCDKRLWTMIDLNRCTSITPLMLSGIIRRQPGSLDLSWTNISKKQLGWLINRLPGLRVLK
LSGCSWAAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNV
EDLRLAGLDITDASLRLISRQMPSLSMLDLSYCNHINDQSVNLLTAAGTTTRDSLTDINL
SVCNRVTDHSLNFFKRCGSICQIDLRFCKQVTRTACERFIAEMSVSVPFRLKEDKLLQKA
S
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcactgagcggagacgatgaggaatatgattcagagtctgagcagcagcgg
gcagccaaccggccgaagccgaaggttgggacgtctgcggccatcaagctgccgtccaat
cgcagctcgtcgggagcgagacgcaggaggacgcgatgccggaagtgcgaggcgtgcgtc
cggaccgagtgtggagagtgtcacttctgcaaagacatgaagaagttcggagggccgggg
cgcatgaagcagtcctgcatcatgaggcagtgcattgcaccggtgctgcctcacacggcg
gtgtgtgtggtgtgtaaagaggccgggaaagaggacacactggaggaagaggaggaaaag
ttcaacttcatgctgatggagtgctccatctgcaacgagatcgtccatcccaactgcctg
aaggtgaacgatgcctcaggagtggtgaacgatgagctacccaactgctgggaatgcccc
aaatgcaaccatgctggaaaaagtggaaaatcccccttggcattgaaacaaaaaaggggt
ccagggttcaagtacgcctccaacctcccgggctctctgctgagggagcagaagtccctg
aaggaggagggggacgcgtccacagcggtgaagaggaggccggacagagaggagaccccc
aggtaccgaccggaggagactctccaccgacagccccccctgctctcccccagcaacctg
ccccgcccccggcccgaggacaaactgaggaagaagaggaagctgtttgatgacgatgag
gaagaggatctcggcgtgaggaagaaggaaaagtcagatgatccttattattccaaactc
ctacatcatataaagacagaagaggaggacgaagacccctatgaggaggaggatgaagaa
ggcagggtgcctcacttcaggggaggtgtagaaaggagagggcgttttgtggaccctgaa
gacgaagcagatgagagggactccaggagttcactcttaaacccctccgttaaaactcct
tttggagacagtgaccagtcgctctgcagctccccgcaggccggccccagcagcgagggc
ggcagtgagacccaggaaaagggtccgcgtcgcaaagcccgccggaagcgccgtttaccc
aacagagagctgagccgggagctgagcaaagccctgaaccaggagatccagaagacggag
gactgcctggccaacgagaaccggcagcccctcaaggtggagccgcagacggagaacgag
gaacccaagaggctgttccgcaacgagctgggggatcagaggccccacctcaagaacaaa
gagatgaacgggaccccctgggagctgcgccacttctaccccagtcagatcaccccgctg
ggcttcaacaggagcacccccaccaaccggcccgtgcccccacactccccgcccaagtgt
gtccagatggagcggcacgtcatccggccgcccccgataagcccgccccccgacagactg
ccgctgaaagacgggaaatcacacgtcattcagcgagaggtgtggatgaagatcttcgga
tacctcacccaccaggagctgtgtgtctgcatgagggtctgcaagacgtggaacagatgg
tgttgtgataagagactctggacgatgatcgacctgaaccgctgcacctccatcacgcct
ctcatgctgagtgggattatccgccggcagccgggctccctggacctcagctggaccaac
atctccaagaaacaattgggctggcttataaacagattgccaggtcttcgggtgttaaag
ttgtcggggtgttcctgggcggcggtttctgcgctctgcacctccagctgccctctgctg
cgcaccctggacgtccagtgggtagaggggctcaaagacgctcagatgagggacctcctc
tctccccccacagacaacagaccaggtcagctggataaccgctgcaagctgcggaacgta
gaggacctgcgcctggcggggctggacatcaccgacgcgtctctacgcctcatcagccgg
cagatgccctctctctccatgctggacctgagctactgcaaccacatcaacgaccagtcg
gtcaacctgctgaccgccgccgggaccaccaccagggactccctcacagacatcaacctg
tcagtttgtaaccgggtcacagaccattccctgaactttttcaagcgctgtggcagcatc
tgtcagatcgacctgcgcttctgcaagcaggtgacgaggacggcctgcgagcgcttcatc
gcagaaatgtcagtgagcgtgccgttcagactgaaagaggacaaactgctgcagaaggcc
agctag
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integrated database retrieval system
