Trematomus bernacchii (emerald rockcod): 117474119
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Entry
117474119 CDS
T09643
Name
(RefSeq) breast cancer type 1 susceptibility protein homolog isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03440
Homologous recombination
tben03460
Fanconi anemia pathway
tben04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117474119
09124 Replication and repair
03440 Homologous recombination
117474119
03460 Fanconi anemia pathway
117474119
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tben01009
]
117474119
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tben04121
]
117474119
03036 Chromosome and associated proteins [BR:
tben03036
]
117474119
03400 DNA repair and recombination proteins [BR:
tben03400
]
117474119
Enzymes [BR:
tben01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117474119
Protein phosphatases and associated proteins [BR:
tben01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117474119
Ubiquitin system [BR:
tben04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117474119
Multi subunit type E3
BRCC complex
117474119
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
117474119
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
117474119
BRCA1-A complex
117474119
BRCA1-B complex
117474119
BRCA1-C complex
117474119
BRCA complex
117474119
FA (Fanconi anemia) pathway
Downstream FA components
117474119
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_4
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
RTT107_BRCT_5
RING_XB3-XBAT31
zf-Nse
zf-RING_5
PTCB-BRCT
YicC-like_C
zf-ANAPC11
zf-RING_6
zf-rbx1
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
117474119
NCBI-ProteinID:
XP_033976049
LinkDB
All DBs
Position
Unknown
AA seq
1427 aa
AA seq
DB search
METPLAPDVKKGISVLWETLQCPICLDLMTAPVSTKCDHQFCKCCVMKLLDNTIPSRASC
PVCKTKITRRSLQESPGFQRLVSGLQSMIQAYENDTGINYFTGMCQEKGQPGVSDAEATK
HCHDNPFEETPDNEENVDNDDLSRSPSSTIAAQNGFARLMGLEDTSPLTTENEGLDSGLG
EAPPMSDKKTHSPPDNVEAIETEMSDVVEKATSRHKTRGKIKASFQPPLITDETKDQPLR
KSLRKKQNTDLDPDKILEEKQKKSLEKVAEWLMKVPTEGSLELEKPNKNSDDSESFSSSS
TIDVKQHSIFMNPTREDRAKVLNEQVFGAVYKRDRKGNRNRSPPHVEPQTTKETQKNSKI
NKRNTLADIVKKTSTEDKHGSDLEEEQQRIDQVIDTSSDIFEEAEKMDVILENDTDKHGE
EFDNLSESKKDGKDEVPCPPSDIEPLQPKNKLKKRTRSSLQQVDIDLQKQAEEHSESTEQ
KKTDKKKGRNTRSENGKPARVPKPLVLVGVQNGETSPMAKPRSEEVQVHIENYPSSEEQE
IPVTRSNTRSRRLQLFAEEVQEGHKKANWRANKAKKKSIVAKQSEEAKDGELDDMPSPKN
ESMTQVAEQNGCIYGDDLGGIENMESGERPTPNAPDSIVEVPNTDTWSEASAACNVAVVP
SSTSPHEDTVVPPTFERHNPANHLPNNTRLETLTNQTKCAGAEHEEDNNDSELDTEQLLK
SFKATKRKSFNLGGSNVKRTRGFDQENVQVSEEKDSKRVGSGVESVNNQMYTKESEMTNQ
EALRDNETSSCCDFISPSISPSLTRKLVEKADQVVVEASIPDSSCSGQDISFSRNNVSSA
LTPNKVSKRKIESPNLSAVPHVVDSGLRFTAEHDELNEPSKYSQITEKQLDAGKGMEIRD
VCNTNAGGTHSVNTAEHFVNTEFSLTPSGLSAPVVQIREANSCGSGELSAHSSLKSKPKK
RKRAQRLESSSESDRSEEELPTLTEIFGTSASRSAVTKDQGDSGEARCEGVSVPGAQQMS
RPPASHSPDCVPTSQGSVDLFSTPDECDVPVNDVGTSQYESSQFSSEVLVTQQKIDMQNE
LVRLEKLMALVTEVLQEKEDSPAKEDPSKTDQSSKTTGQETNRSPSCNKVTGPGSDQEAV
QEVEREPSTRPSDGEGVAEPGVSETEVQRSTHTGPGAKGSGDSKTPSSSPAARPLKSNGS
PSDGQEDKENNTPPKDRSKAKMVLASSGLAPNEQTMVKKFAKRVGGRVVSQVTPEVTHVI
MHTDEQLVCERTLKYFLGIAGRKWVVSFQWISECFKLKKVLDESAFEVGGDVVNGPDHQG
PMRARTTEDRSLLMKGFKICFQGSFTDMTTDEMEWMVELCGAAVVKDPLLLDRKQQKSHQ
LVIVQPGSESSSSTYNSLSKQATVVTRGWLLDTVATYTLQNYNKYKT
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atggaaacccctctggcccctgatgtcaaaaaggggatttcagtcctttgggagaccttg
cagtgtcccatatgcttggatttaatgactgcacctgtgtctaccaagtgtgaccatcag
ttttgcaaatgttgtgtgatgaagcttttggacaacaccataccaagcagggctagctgt
ccagtgtgtaaaaccaagataaccagaaggagcttgcaggagagccctgggttccagaga
cttgtttcaggattgcagagcatgattcaggcgtatgaaaatgacacaggcatcaactac
tttactggtatgtgccaggaaaaaggacaaccaggagtctcggatgctgaagctactaaa
cattgtcatgataatccatttgaagaaacaccagacaacgaagaaaatgttgacaatgat
gatctgtcaaggtctccctcttcaactatagcagcccagaatggatttgcacgactgatg
ggacttgaagacacaagtcctttgacgacagaaaatgaaggcctggacagtggtcttgga
gaagccccaccaatgtctgacaagaaaacgcacagccctccagataatgtggaagcaatt
gaaacagaaatgtcagacgttgtggaaaaggcaacatcaagacacaaaacaagaggcaaa
ataaaagcctcctttcaaccaccattaataacagatgagaccaaagaccaacctttaaga
aagtccttaaggaaaaagcagaacacagatttggatcctgacaagattcttgaggagaaa
cagaaaaaaagtctagagaaagtcgctgagtggctcatgaaagttccaactgaaggaagt
ctggagttagagaaacccaacaaaaactcagacgattctgagagcttttcttcatcttca
acaatagatgtcaaacaacatagcatctttatgaatcctaccagagaggatcgtgctaaa
gttctcaatgagcaggtgtttggggccgtctacaaacgagacagaaaaggaaacaggaac
aggtctcctccacatgtcgaaccacaaacaaccaaagaaacacaaaagaactccaaaata
aataagaggaacactcttgctgatattgtcaagaaaacaagcaccgaagataaacatggc
agcgatttggaggaagagcaacaaaggatagaccaggttattgataccagtagtgacatt
tttgaagaggcagaaaagatggatgtcattctggaaaatgacacggacaaacacggagaa
gagtttgacaacttgtcagaaagtaagaaagatggcaaagatgaggttccttgtcctccg
tctgatattgaaccactacaaccaaaaaataagttgaagaaaaggacacgcagctctctg
cagcaggtcgacattgatttgcagaagcaagccgaggaacattcagaaagtaccgagcaa
aagaaaactgacaagaagaaaggtagaaacacgaggtcagaaaatggcaagccggctaga
gtgccgaaaccccttgttctggtcggagttcaaaatggagaaaccagtcctatggctaaa
ccgaggtcagaagaagttcaagtacatattgaaaattacccaagcagcgaggaacaagaa
atccctgtcacgaggagcaatacgagaagtagaagacttcaactctttgctgaggaagtc
caggaaggtcacaagaaagcaaactggagagccaataaagctaaaaaaaaaagcattgtt
gcaaagcaatctgaggaagctaaagatggagaattggatgatatgccatcacctaagaat
gaaagcatgacgcaggtggctgaacaaaatggatgcatttatggtgatgatttaggagga
atagaaaacatggagtctggtgagagaccaacaccaaatgctccagattccattgtcgaa
gtaccaaatactgacacttggtctgaagctagtgctgcttgtaatgtcgctgtggtcccg
agctctaccagtccacatgaagacactgtggtacctccaacatttgaacgccacaatcca
gcaaatcatctccctaacaatactcgcttggaaaccttgactaaccagacaaaatgtgct
ggagctgaacatgaggaagataacaatgacagtgaactggacacggagcaactgctcaag
agcttcaaagccactaaaaggaaatctttcaatcttggcggctcaaatgtaaaaaggacc
cggggcttcgaccaagaaaacgtgcaggtatccgaagaaaaggatagcaagcgtgttggt
tctggtgttgaatctgtaaataatcagatgtacacaaaggaatctgaaatgacaaaccaa
gaagcattaagagacaatgaaacctcatcttgctgtgatttcatatccccttccatctca
ccttccctaacacgaaaactagttgagaaagctgatcaagtggtggtagaagcctccatc
cctgatagcagttgttcaggtcaggatatctctttctccaggaataatgtcagcagcgcc
ctcactcccaataaagtgtcaaaacgcaaaatagaaagtcctaatctctccgctgtgcct
catgtagtagattctgggctccgcttcacagctgaacatgacgagttaaatgaaccctca
aagtattctcagatcacagagaagcagcttgatgctggcaaagggatggagataagagac
gtgtgcaatacaaatgccggtggaacacattcagtcaacactgctgaacattttgtaaac
acagagttctctttaactcccagcggcctcagtgcaccagttgtacaaatccgtgaagca
aacagctgtggtagcggagagctgagcgcccattcctccctcaagagcaaacccaagaag
aggaagagggcccagaggctcgagtcttcctcagagtcagaccgcagtgaagaggaatta
ccaactttgacagagattttcggaacatcagcttctcgctctgctgtgacaaaggaccag
ggagactccggagaagctagatgtgagggtgtttcagttcctggagcacaacagatgagc
cgtccacctgcaagccacagccccgactgtgttcctaccagccaaggctctgtggacctg
tttagcacgcctgatgaatgtgatgtcccagtgaatgatgtcggcacttcacaatatgaa
tcatcacaattttcaagcgaagttcttgtcacacagcaaaagatagacatgcagaatgag
ctggtgaggttggagaagttgatggctctggtgaccgaggtgcttcaggagaaagaagac
agtcctgcaaaagaagacccctcaaaaacagatcagagcagcaaaaccacaggccaagag
acaaacagatccccatcgtgcaacaaggtcacaggcccaggttcagaccaggaagctgtt
caagaagtagagcgagagcccagcacaagaccatctgatggagaaggggtcgccgagccc
ggtgtgtcagagacggaagtgcagcgctccacacacacggggccgggtgcaaaaggctcc
ggagactccaagactcccagttcaagtccagcagccagaccattaaagagcaacggttca
ccatcagatgggcaagaagacaaagaaaacaacactcctccgaaagacagaagcaaagct
aagatggtgctagcgtcatctgggttagccccaaatgaacagacaatggtgaaaaagttt
gccaagcgagttggtggccgagtggtttcccaggttaccccggaggtgactcatgttata
atgcacacagatgaacaactggtatgtgagcgcacgctgaagtacttccttggcatcgca
ggcaggaagtgggtggtgagcttccagtggatttcagagtgcttcaaactaaagaaagtc
ttggatgagagtgcctttgaagttggaggtgatgtggtgaatggacccgaccatcagggc
cccatgagagctcgaaccactgaagaccgtagcttactcatgaagggcttcaagatctgc
ttccaaggatctttcacagacatgacgacagatgaaatggagtggatggtggagctctgt
ggagcagctgtagtcaaagacccacttctcctcgaccgtaaacagcagaagtcccatcag
cttgtcatcgtacagcctggatctgagtcgtcttcgtccacatacaacagtctgtctaaa
caagctacagtcgtgactcgtggttggctgttggataccgtggcaacctacaccctccaa
aactacaataagtacaaaacatga
DBGET
integrated database retrieval system
