KEGG   Trematomus bernacchii (emerald rockcod): 117476319
Entry
117476319         CDS       T09643                                 
Name
(RefSeq) TNF receptor-associated factor 2-like
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
tben  Trematomus bernacchii (emerald rockcod)
Pathway
tben04010  MAPK signaling pathway
tben04137  Mitophagy - animal
tben04141  Protein processing in endoplasmic reticulum
tben04210  Apoptosis
tben04217  Necroptosis
tben04621  NOD-like receptor signaling pathway
tben04622  RIG-I-like receptor signaling pathway
tben04920  Adipocytokine signaling pathway
tben05132  Salmonella infection
tben05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:tben00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    117476319
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    117476319
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    117476319
  09143 Cell growth and death
   04210 Apoptosis
    117476319
   04217 Necroptosis
    117476319
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    117476319
   04622 RIG-I-like receptor signaling pathway
    117476319
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    117476319
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    117476319
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    117476319
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tben03019]
    117476319
   04121 Ubiquitin system [BR:tben04121]
    117476319
Enzymes [BR:tben01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     117476319
Messenger RNA biogenesis [BR:tben03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     117476319
Ubiquitin system [BR:tben04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    117476319
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF2_zf TRAF3_RING zf-C3HC4 zf-C3HC4_2 ATG16 zf-C3HC4_4
Other DBs
NCBI-GeneID: 117476319
NCBI-ProteinID: XP_033978644
EnsemblRapid: ENSTBNG00005018759
LinkDB
Position
Unknown
AA seq 599 aa
MATQEPSPPSSMESNKPGFPKKILGNKLEDKHLCNCCHNILRRPFQAQCGHRFCSYCFNR
TVSNGPQKCSACIKEDIFEEPTSLLKQGCAFPDNAVRREVENLSAVCIHENCTWKGSIKD
YELNHEGKCEFMILPCPSCKERIRFNEQERHNERECPERTLNCKYCKEPFHFKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRTPCRFHVVGCDMSVEKEKIHDHERTYA
YEHLNLLLHYIMGMKVSMEGLQPQGLEVAGHKLLELQQSLRELEARVSQLSTTSSGPPVQ
GAAAATASTSSSSSGPPGPPTLAPLPPPPTLAPTLSVSTSFTPLPSSVGAALELQLHSEK
TKVVELGRRCTELEVKSGTFENVVCVLNREVERFATTMEASNRQHKLDQDKIEALSNKVR
QLERTVGLKDLTVAEMEGRLREMSATTFDGVFVWRISDFAKKRQDAIAGRAPAMFSPAFY
TSKYGYKMCLRIYLNGDGTGRGSHLSLFFVVMRGLSDALLKWPFNQKVTLMLLDQSNREH
IIDAFRPDVTSSSFQRPVSEMNIASGCPLFCPLSKLDAKNSYIRDDTIFIKAIVDLTGL
NT seq 1800 nt   +upstreamnt  +downstreamnt
atggccacacaggagccgtcccccccctcctccatggagagcaataaacccggcttcccc
aagaagatcctgggcaacaagctggaggacaagcacctgtgcaactgctgccacaacatc
ctgcgacggccctttcaagcccagtgtggacatcgcttctgttcctactgcttcaacagg
actgtcagtaatggaccccagaagtgcagtgcctgtattaaagaggatatttttgaagaa
cctacatcgcttttgaaacaaggatgtgcttttcctgacaacgcagttcggagggaggtc
gaaaacctttcagctgtttgtatccatgaaaattgcacttggaaaggcagcattaaagac
tatgagctgaaccacgagggaaagtgtgagttcatgatcctcccctgcccctcctgtaaa
gaacgaatccgcttcaatgaacaggagcgccataatgagcgagagtgcccggagagaaca
ctcaactgcaagtactgcaaggagccatttcacttcaaaaacatcaaggcacatgatgag
atctgtcccaagtacccgatgatctgtgaaggctgtgccaagaagaaaatacccagagag
aagtacgtggaccacattaagttctgcagcaaattcagaacaccgtgtcgatttcatgtc
gtgggatgtgatatgtctgtggaaaaggaaaagattcatgaccatgagcgcacctatgcc
tacgagcacctcaacctgctactgcactacattatgggcatgaaggtgagcatggagggc
ctgcagccccagggactggaagtagctggacacaagctgctggagctccaacagtccctc
agggagctggaggccagagtctcccagctcagcaccacctcctctgggcctcccgtgcag
ggagcagccgccgccactgcctccacctcatcctccagctccggcccccctggtccaccc
actttagctcctctccctccccctcccaccctggctcccactctctccgtctctacctcc
ttcacccccctgcccagctcggtgggtgcggcgctggagctccagctccacagcgagaag
accaaagtggtggagctgggtcgcaggtgtacggagctcgaggttaaatccggcacgttt
gaaaatgtggtgtgtgtcctgaacagagaggtggagcggtttgccaccaccatggaggcc
agcaaccgtcagcacaaactggaccaggacaagatcgaggctctgagtaacaaggtgcga
cagctggagaggacggtggggctgaaggacctcacggtggctgagatggagggccggctg
agggaaatgtctgccacaacctttgatggcgtcttcgtctggaggatctctgatttcgcc
aaaaaaagacaagatgccatcgctggtcgggcccctgcaatgttttcaccagccttttac
accagtaagtacggatataagatgtgtctgcggatctatctgaatggagatgggacgggg
cgtggcagccacttgtccctgttctttgtggtgatgaggggactgagtgacgctctgctc
aaatggcctttcaatcagaaggtgactctgatgctgctggaccagagcaacagggagcac
atcatcgacgcctttcgccctgatgtcacttcatcttccttccagcgaccggtgagcgag
atgaacatcgccagcggctgtccgctcttctgcccgctctccaagctcgatgccaagaat
tcctacatccgcgacgacaccatcttcatcaaggccatcgtggacctcaccggcctctag

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