KEGG   Trematomus bernacchii (emerald rockcod): 117476548
Entry
117476548         CDS       T09643                                 
Name
(RefSeq) LOW QUALITY PROTEIN: lysine-specific demethylase 2B
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
tben  Trematomus bernacchii (emerald rockcod)
Pathway
tben03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:tben00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    117476548
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:tben03000]
    117476548
   04121 Ubiquitin system [BR:tben04121]
    117476548
   03036 Chromosome and associated proteins [BR:tben03036]
    117476548
Enzymes [BR:tben01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     117476548
Transcription factors [BR:tben03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    117476548
Ubiquitin system [BR:tben04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     117476548
Chromosome and associated proteins [BR:tben03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    117476548
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     117476548
SSDB
Motif
Pfam: PHD_4 zf-CXXC JHD F-box-like F-box JmjC Cupin_8 LRR_4 Tra_M LRR_At1g61320_AtMIF1
Other DBs
NCBI-GeneID: 117476548
NCBI-ProteinID: XP_033979063
LinkDB
Position
Unknown
AA seq 1374 aa
MAQAVETCAESGRRLRSICRRMYDENEDLSDVEEIANIRGFSVEEKLVSDSYSASFVLCM
EGKDFSYEYVQKDALRTPLIFKEKDGLGIRMPDPEFTVSEIKGLVGSRRSVDVMDVSTQK
GSEMSMAQFVRYYETPEEEREKLFNVISLEFSHTKLENLIKRPTVVDQVDWVDNTWPPDL
KQSQTEATNVISDMKYPKVQRYCLMSVKGCYTDFHIDFGGTSVWYHVFKGQKVFWLVPPT
PHNLALYEDWVLSGKQSDIFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPEDSLVFGG
NILHSFNIPMQLTIHEIENRTKVNSKFRFPFYNEICWYVLERYLHCLTKRSYLSREVRKE
PVPTDYETKVNTESPSSDSRIQDLNEDSCETQVRDGEKPERGAQDGPSSPDNRRGQHLKA
VLSVDSEDSCNPGSTSLEFPQTPSDSPASESVTKWTHLTEFELSGLRKLVEKLESLPENK
KCVPEGIENPQALLEDMKVLLKEHADDDPTLAITGVPVVYWPKKTIKPRPPNRPKPKMAA
SPASAVKLSACRGTSGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMR
QCIAPVLPHTAVCLVCGEAGKEDTVEEEEEKFNLMLMECSICNEIVHPNCLKVKDSNGVV
NDELPNCWECPKCNHAGKTGKVRGPGFKYASNLPGSLLKEPRLNRDSKDEPDSPIVATAT
VTALTATSALKRKAEREEVPKRKDDEPPKKRPPLLSLDGTPRPRIEDNPLRRKRKLFDTN
DEPVIVKKKKKLSKPDDPLTPKRHIKTENDHDEEDDQVDHEGDRFSLERIKLKGKKEYDD
EDQEEDEEGEETVKKERDRSAEDKAKVLLSPLIRTSAIRESEQTTNSPRAGPSSDSGDAQ
LKARHQRRRLPNKELSKEFKQETPKAADQNHGSVKTEDGSANHNRRQLKKEDSMTNQNRK
PLKTEDSSTNQSRRALKTEEGLTNQNRRPLKTEDSLANQNHRPVKTEPENEVDEQKPRWP
LNNGGSDLGDWLPHRGREGNDTTRGYSPLGWNRGTQITPICPRPLPCRSPPKCIQMERHV
IRPPPISPPPDRLSLNDGETHVMRREIWMTVFSHLTHRDLCVCMRVCRTWNRWCCDKRLW
KHINLNRCKSITPLMLSGIIRRQPVALDLSWTNISKKQLSWLINRLPGLRVLLLSGCSWV
AVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRSKLRNVEVLRLAG
LDITDTSLRLLIRYMPSLSKLDLSYCNHVTDQSVNILTAAGTTTRDSLTDINLSVCNRVT
DQSLTYFKRCGSVCHIDLRYCKQVTKEGCDQFIAEMSVSVQFELIEEKLLQKIS
NT seq 4125 nt   +upstreamnt  +downstreamnt
atggcccaggccgtggaaacgtgtgccgaatccggacgcaggctgcgctccatctgccgg
aggatgtacgatgaaaacgaggatctatccgatgtggaagaaattgcaaacatcagaggt
ttcagtgtggaggaaaagctggtcagtgacagttacagcgcctcatttgtgctctgcatg
gagggtaaagacttctcttatgaatatgtgcaaaaggacgctctcaggaccccactcatt
tttaaagagaaagatgggcttgggatcagaatgccggatccagaatttacagtcagtgaa
attaaaggattagttggcagtcggcgctccgtggatgtgatggatgtgagcactcagaaa
ggctctgagatgagcatggctcagtttgtgcgttattatgagacaccagaggaagagcgg
gaaaaactcttcaacgtcatcagcttagagttcagccacactaagctggaaaacctcatc
aagcggcccacagtggtggatcaagtggactgggtggacaacacgtggccacctgatctg
aaacagagccaaacagaagccaccaatgtaatctcagacatgaagtatcctaaagtgcaa
aggtattgtttgatgagtgtaaagggctgctatacagacttccacattgatttcggtgga
acctctgtttggtatcacgtattcaaaggacaaaaagtgttttggcttgtgcctccgacc
cctcataaccttgccctttatgaggactgggtcctgtcaggcaagcagagtgatatcttc
ctgggagaccgagctgacggatgccagagagtggagcttaagcaaggatacaccttcttc
atcccatctgggtggatccatgctgtctacactccagaggactcactggtgtttggaggc
aatattctgcacagcttcaacattcctatgcagcttaccatccacgagatagagaatagg
actaaggttaattcgaagttccgttttcccttctacaatgagatttgctggtatgtcctg
gagagatatctgcactgcctcacaaaacgttcctatttatctcgggaggtccgcaaagag
cctgtaccaactgattatgagacaaaggtcaacacagagagcccctcctctgactccagg
atccaggacctgaacgaggactcatgtgagactcaggtcagggatggtgagaaaccagag
agaggcgctcaggacggacccagctctcctgacaaccggaggggccagcacctcaaagcc
gttttatctgtggactctgaggacagctgtaaccccggctccacctctctagagttcccc
caaaccccctctgactccccagcctcggagtctgtgactaaatggacgcatttgacagag
ttcgaactgagcggactcaggaaactggttgagaagctggagtcgctccctgaaaataag
aaatgtgttccagagggaatagagaacccacaagccctgctggaagacatgaaggttctc
ttaaaagaacatgccgatgacgacccaacattagccatcactggggttcctgtggtgtac
tggcccaagaaaaccataaagccccggcctcccaaccggccgaaacctaagatggcagct
tctcctgcctcagcagtcaagctgtcagcgtgtcggggaacatctggcgccaggaggagg
cggacgcgctgccggaagtgtgaggcatgcctgcggacggagtgtggagagtgccacttc
tgtaaagacatgaagaagtttggtgggccgggccgcatgaaacagtcctgcatcatgagg
cagtgcattgcacctgtcctgccccacaccgctgtgtgtctcgtctgtggagaggcaggg
aaagaggacacagtggaggaagaggaggagaagtttaacctcatgctcatggagtgctcc
atctgcaatgagattgttcatcctaactgtcttaaggtaaaagattcaaacggagtagtc
aatgatgaattgcccaactgctgggagtgcccaaagtgcaaccatgctgggaagacaggg
aaagtaagggggccgggatttaagtacgcgtccaaccttcctggctctctactgaaggag
ccgcggttaaaccgggattcaaaagacgaacctgactcgccgatagtcgcaacagcaact
gtgactgctctgactgccacatctgctcttaagagaaaggcagagcgggaggaagtccct
aagaggaaagatgacgagccaccgaagaaacgcccccccttgctgtctctggatggtacg
ccccggccgaggattgaggacaacccactgaggagaaagaggaaactttttgacaccaat
gatgaacctgtcattgtaaaaaagaagaagaaactctcaaaaccggatgaccctctgact
cccaagcggcacatcaagaccgagaacgatcacgatgaagaagatgatcaggtggatcac
gaaggagatagattttctttggaaaggattaagttaaaggggaaaaaagagtatgacgac
gaggaccaagaagaagatgaggagggagaggaaacagtgaaaaaagagagagaccgcagt
gccgaggacaaagccaaggtcttattaagtcccctgataagaacctctgccatcagagaa
agtgaacaaaccacaaactctcccagagcgggaccgagcagcgactcaggagacgctcag
ctgaaggctcgccatcagagacgacggctccccaacaaggagctgagcaaagagttcaaa
caggagactcccaaggcagcagaccagaaccacggctcggtgaagacagaggacggctca
gccaatcacaaccgacgacaactcaagaaagaggactcaatgaccaatcagaatcgcaaa
ccgttaaaaacagaggactcttccactaatcagagccgcagggcccttaaaacggaggag
ggtttgaccaatcaaaacaggcggccactgaaaaccgaggacagtctggccaatcaaaac
cacaggcctgtaaaaaccgagcctgagaacgaggtggacgagcaaaagccaagatggcct
cttaataacggcggcagtgatctgggggactggctgccacacagggggcgagaggggaac
gacacgacgcgtggttactcgccgctcggatggaacaggggcacccagatcacaccgata
tgcccccgaccactcccgtgcaggtccccgccaaaatgcatccaaatggagcgccatgtg
atccgtcctcctcccatcagccccccgccggacagactctcgctgaacgacggagaaaca
cacgtgatgcgcagggagatatggatgacggttttcagtcacttgactcacagagatctc
tgcgtgtgcatgcgtgtctgcaggacgtggaacagatggtgctgcgataagaggctctgg
aagcacatcaatctgaaccggtgtaagtccatcactcctctcatgctgagcgggatcatc
cgcaggcagccggtggctctggacctcagctggaccaacatctccaaaaaacaactcagc
tggctcatcaacagactgccaggtctgcgggtgctgctgctgtcagggtgctcctgggtg
gcggtctctgccctctgcacctccagctgtcctctcctgcggaccctggatgttcagtgg
gtcgagggactaaaagacgcccagatgagggacctgctgtctcctcctacagataacagg
ccaggtcagttggacaacaggagtaagctgcggaacgtggaggtcctgcggttagcgggc
ctggacatcacggacacgtctctgcgcctcctcatccgctacatgccctcgctgtccaag
ctggacctcagctactgcaaccacgtcacggaccagtcggtcaacatcctgacggcggcc
gggacgaccaccagagactcgctcactgacatcaacctgtcagtctgtaacagggtcact
gaccagtcgctgacctacttcaagcgctgtgggagcgtctgtcacatcgacctgcgatac
tgcaagcaggtgaccaaggagggctgcgaccagttcatcgcagaaatgtccgtcagcgtg
cagtttgaattgatagaggagaaactgctgcaaaagatcagctag

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