Trematomus bernacchii (emerald rockcod): 117476612 Help Entry 117476612         CDS       T09643                                  Name (RefSeq) thrombospondin-1-like isoform X1   KO K16857   thrombospondin 1 Organism tben  Trematomus bernacchii (emerald rockcod) Pathway tben04115   p53 signaling pathway tben04145   Phagosome tben04148   Efferocytosis tben04350   TGF-beta signaling pathway tben04510   Focal adhesion tben04512   ECM-receptor interaction tben04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:tben00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     117476612   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     117476612  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     117476612    04148 Efferocytosis     117476612   09143 Cell growth and death    04115 p53 signaling pathway     117476612   09144 Cellular community - eukaryotes    04510 Focal adhesion     117476612   09142 Cell motility    04820 Cytoskeleton in muscle cells     117476612  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:tben04131]     117476612   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:tben00536]     117476612 Membrane trafficking [BR:tben04131]  Endocytosis   Phagocytosis    Opsonins     117476612 Glycosaminoglycan binding proteins [BR:tben00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    117476612 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC VWC2L_2nd EGF_3 TSP1_ADAMTS EGF_CA TSP1_CFP_C cEGF Laminin_G_3 EGF TSP1_CCN Motif Other DBs NCBI-GeneID:  117476612 NCBI-ProteinID:  XP_033979169 LinkDB All DBs Position Unknown AA seq 1171 aa AA seqDB search MMLCGIFLLLMLWSCESARLAESPDDNSVYDLFDLARVSKRHNGVSIVKGADPYSPAYKV LNPDLIPQVPDSSLRDLLDSIQAERGFLLLVNLKQFKKTRGSLLTIEKNDGSGPVFEIIS NGKANTLDVVYSTVTQQQVVSIEDADLATGQWKNITLFVQDDRVQLFVGCVEINISEMDL PISQVLTPEVADIAKLRIGKGAVRDRFMGVLQNVRFVFGTTIDAILRNKGCQNGATLTDV MTLENPVNGSSPAIRTDYTGHKAKDVQSVCGFSCDDITGMFKELKGLGLVVKQLTFDLRK VSDESNLIRNQMKIRSGICIHNGIVHNDKEEWTVDGCTECTCQNSATVCRKISCPLLPCA NATVPDGECCPRCDPGDEAEDDWSPWSDWTHCSVTCGRGIQQRGRSCDRINNNCEGTSVQ TRDCYPQECDKRFKQDGGWSFWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGMDCQGDGR QTEICQKSPCPIDGGWGPWSIWDTCSVTCGGGFQTRKRLCNDPIAQYGGKECVGDATGSQ LCNKKACPIDGCLSSPCFPGAKCTSFPDGSFKCGKCPLGYTGNGVACKDIDECKAVSDAC HTHNGVHRCENTQPGYNCLPCPARFSGPQPFGRGVEQATAKKQVCKPRNPCQDGSHDCHK NANCIYLGVFSETMFRCECRPGYAGNGRICGEDSDLDGWPNTDLRCVENATYHCKKDNCP NLPNSGQEDHDKDGLGDECDNDDDNDRIPDDRDNCPKVYNPGQYDADRDDIGDSCDNCVH EANTDQTDTDNNGEGDACAIDIDGDGILNEDDNCPYVYNEDQRDTDRDRVGDHCDNCPLE HNPDQIDSDSDLIGDKCDNNQDIDEDGHQNNLDNCPYIANANQADHDKDGKGDACDHDDD NDGIPDDKDNCRLAFNPDQLDSDGDGRGDICKDDFDQDNVLDIHDVCPENFAISETDFRR FQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFSAVDFSGTFFINTERD DDYAGFVFGYQSSSRFYTVMWKQVTQTYWSHTPTRAQGYSGLTIQVVNSTTGPGEHLRNA LWHTGDTAGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGLIRVVMYEGKRIMADSGNIY DKTYAGGRLGLYVFSQEMVYFSDLKYECRDT NT seq 3516 nt NT seq  +upstreamnt  +downstreamnt atgatgctgtgtggcatcttcttgctgttgatgctttggagctgtgaaagcgccagattg gcagagagcccagatgataacagtgtgtatgacttatttgatctggcccgggtaagcaag agacacaatggagtgagtatagtgaaaggtgcagatccctacagccctgcatacaaagtc ctcaacccagacctgatcccccaagtccccgacagctccctcagggacctcctcgactcc atccaggctgagaggggcttcctcctcctggtcaacctgaagcagttcaagaaaaccagg ggaagccttttgaccatcgagaagaacgatggatctggacctgtatttgagatcatctcc aacgggaaggccaacactctggatgtggtctactccaccgtgacccagcagcaggttgtg tccatcgaggatgcagatttggccaccggacaatggaagaacatcaccctgtttgttcag gatgaccgggtgcagctttttgtcggctgtgtggagatcaatatatcagagatggatttg ccaatctctcaagtgctgaccccggaggtggcagacattgccaagctcaggattggaaaa ggagctgtaagggacagatttatgggagtgcttcaaaatgtgcgctttgtctttggaacc actattgatgccatactgagaaataagggatgccagaatggagctactttaactgatgtc atgaccctggaaaacccagtcaacggctccagccctgccattaggactgattacaccggg cacaaagccaaagatgtgcagtctgtctgcggcttctcttgtgacgacatcaccggcatg tttaaggagctcaagggactcggtttggttgtgaaacagctgaccttcgatctgcgcaaa gtgtctgacgaaagcaatctcatcagaaaccaaatgaaaatccgcagtggcatttgcatc cacaacggcatcgtgcacaatgacaaagaagaatggactgtggatggctgcaccgagtgc acctgccagaactctgctactgtgtgtcgcaaaatctcctgccctctgctcccatgcgcc aatgccaccgtgcccgacggagagtgctgccctcgctgtgacccaggcgacgaagcagag gatgattggtccccctggtctgactggacacattgttctgtgacttgtggtcggggcatc cagcagcgcggacgttcctgtgaccgcatcaacaacaactgtgagggcacctctgtccag acccgtgactgctacccccaggaatgtgacaaacgcttcaaacaggatggtggttggagc ttctggtcaccctggtcttcgtgctctgtgacctgcggggagggggtcatcacccggata cgcctctgcaactcccccacaccccagatgggtggcatggactgccagggagatggacgt caaacagaaatctgccaaaagtccccctgtcctattgatggaggttggggaccgtggtca atttgggacacctgcagtgttacctgtggtggagggtttcagacccgcaaacgtctctgc aatgatcccattgcccaatatggaggaaaggagtgtgttggtgatgctactggttcccaa ctgtgcaacaaaaaggcctgcccaattgatggttgcctctccagcccatgctttcctggc gcaaagtgcaccagcttccccgacggctctttcaagtgcggcaaatgtcctcttggctat actgggaatggcgtcgcttgcaaagacattgatgagtgtaaagcagtctctgatgcttgc cacacacataacggagtccatcgctgtgaaaacactcagcctggttataactgtctgccc tgccccgcccgcttctccggtccccagccttttggaagaggagtggaacaggcaactgct aagaaacaggtttgcaaaccccgtaacccttgccaagatggtagccacgactgccataaa aatgcaaactgcatttacttgggcgtcttctccgagaccatgttccgctgcgagtgcagg ccaggttacgccggaaatggcagaatttgcggagaggacagtgatcttgatggatggccc aatactgacctgcgttgtgtggagaacgccacctaccactgcaagaaggataactgcccc aacctccccaactctggacaggaagatcatgacaaagatggtctgggtgatgaatgtgac aatgatgatgacaatgataggatccccgatgatagggataactgcccaaaagtgtacaac cccggacagtatgacgcagacagagatgacattggcgacagctgtgacaactgtgtgcac gaggcgaacactgaccaaaccgacactgacaacaatggagagggtgatgcctgtgctatt gacattgatggcgatggcattctgaacgaggacgacaactgcccatatgtttacaacgag gaccagagagataccgacagggaccgggtgggagaccattgtgacaactgccctctggag cacaaccctgatcagatcgactctgactcagatctcattggagacaagtgcgacaacaac caggacattgacgaggacggtcaccagaacaacttggacaactgcccctatatagccaat gccaaccaggcagaccacgacaaggacggcaagggtgacgcatgcgaccatgacgatgac aacgacggcatccctgatgacaaagacaactgtaggctggcatttaaccctgatcagctg gactctgatggtgatggccggggtgatatttgcaaagacgattttgaccaagacaatgtt ctggacatccatgacgtgtgccctgagaactttgccattagtgaaacagacttccgcaga ttccaaatggttcctctggaccccaagggcacctcacagattgaccctaactgggtggtc cggcatcagggcaaggagttggtgcagactgtcaactgcgaccctggcattgctgttggt tttgatgagttcagcgcggtggacttcagtggaacattcttcatcaacacagaaagagat gatgactatgctgggttcgtgtttggctaccagtccagctcacgcttctacacagtgatg tggaaacaggtcacacagacctactggtcccacacccccacaagagctcaaggctactct ggcctgacaatccaagtggtcaactctaccaccgggcctggtgagcatctgaggaacgcc ctgtggcacaccggagacaccgcaggacaggtgcgtactctgtggcacgacccaaagaac atcggctggaaagacttcaccgcctacagatggcatctgacccacagacccaagactgga ctgataagagtggtcatgtacgaaggcaagagaatcatggctgattctggaaacatctac gacaaaacatatgctggtgggcgactaggcttgtacgtcttctctcaggagatggtttac ttctcagatctcaaatacgagtgcagagacacataa

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