Trematomus bernacchii (emerald rockcod): 117482037
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Entry
117482037 CDS
T09643
Name
(RefSeq) slit homolog 1 protein-like
KO
K06838
slit 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tben00536
]
117482037
Glycosaminoglycan binding proteins [BR:
tben00536
]
Heparan sulfate / Heparin
Axon guidance molecules
117482037
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_1
Laminin_G_2
LRR_1
LRRCT
LRR_14
LRR_9
EGF_TEN
LRRNT
hEGF
EGF_Teneurin
EGF_DL_JAG
EGF_3
EGF_2
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
117482037
NCBI-ProteinID:
XP_033985895
LinkDB
All DBs
Position
Unknown
AA seq
1515 aa
AA seq
DB search
MPGSRDAAGSGGCGAMMVWGVLVLVAGWGSVEACPTPCSCLGNTVDCHGLGIHSIPRNIP
RGTERLDLNGNNLTAITKADFSGLKHLRVLHLMENQISNVERGAFDELKELERLRLNKNH
LSQFPELLFQKNELLSRLDLSENAIQAIPRRAFRGATVLKNLQLDKNHISCIEEGAFRAL
RSLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNSLRCDCHLAWLSPWLRQRASLGLYT
QCSAPPTLRGLNLAELRKSDFACSGNGGSAFVQPCSLASGSCPPMCSCSNNIVDCRGRGL
TAIPAHLPEAMTEIRLEQNGIKSVPPGAFTSYKKLRRIDLSNNQISEIAPDAFHGLRALN
SLVLYGNKITELPSGVFDGLSSVELLLLNANKIHCIRASVFKDLENLALLSLYDNKIQSL
AKGTFSSLHSIQTLHLAQNPFVCDCNVKWLADFLRSNPIETSGARCASPRRLANKRIAQI
KSSKFRCSAKEQYHIPGTEDRHLSYECNSKPVCPAKCRCEANVVDCSNLRLTKFPEHLPS
STEELRLNNNDLSVLEATRAFKGLSQLKKINLSNNKISEIEDGAFDGASSVVELHLTANH
LESVRGSMFRGMEGLRMLMLRNNKISCIHNGSFTGLGNVRLLSLYDNQLSTILPGAFDTL
PNLSTLNLLANPFNCDCRLSWFGAWLRSRRIVTGNPRCQSPAFLREIPLQDVAVPDFRCR
DGSVLDDISCSPGPQCPSHCTCMDTVVRCSNKHLLALPRGLPRNVTELYLDGNQFTSVPT
ELATFKFLQLVDLSNNKISSLSDDSFSNMSQLTTLILSYNSLHCIPPLALGGLRSLRLLS
LHGNDISELQQGIFSDVASLSHLAIGANPLYCDCRLLWLSDWVKSGYKEPGIARCAGPGG
MEGKLLLTTPADKFQCLGPVEASVRAKCSPCVSTPCQNQGVCQVNETELYTCTCKSGFTG
KHCETPVDACVSNPCTNAGLCISDEQTRGFSCACAFGFHGTFCEVNVDDCEDHGCESDAT
CVDGVGNYTCVCPPNYTGLFCEELEDVCSPGRNPCQHQSTCISTLTGTRCVCIPGWVGPN
CSIDYNECVDHRCQNGAQCVDHLDGYSCVCPQGFSGEFCEAAALPPPPLCQLSACQNGAP
CVQEAGVAVCECLPGFEGDRCQKLVSVNFVDRDSYVQLQDVKNWPQANITLQVSTAEDNG
ILLYNGDNEPIAVELHQGHVRVTYDPGNQPATTIYSTETVNDGLFHTVELVTFNRMLNLS
VDGGEPTTLDSQEGRSQRGAGDAPLYVGGMPEAVLDSSHRLSSQTLNTSSFHGCIRNLYI
NHELQDFTRSRMNPGVEPGCQPCRKLFCLHGVCQPHAEQGPQCHCQPGWTGPLCDQPITA
DLTAAETVTMATGVNPCEGSKCVKGVCVAVDAQTYRCDCEEGFTGESCDIETPCRGEPVR
DVHRLQRGLVLCQTSKPFSWVDCRGRCQAGSMTAAHSCCAPLRLRRRRLTFECDDGTSFT
QDVEKPVECGCKECV
NT seq
4548 nt
NT seq
+upstream
nt +downstream
nt
atgccaggaagcagggatgcagccgggtcaggaggctgcggggcgatgatggtgtggggc
gtcctggtgctggtggcaggatgggggtccgtggaggcctgcccgaccccctgcagctgc
ctggggaacacggtggactgccacggcctggggatccactccatacccagaaacatcccc
agaggcaccgagaggctggatctgaacgggaacaacctgacagcgatcaccaaggcagac
ttctctggtctcaaacacctcagagtccttcatctgatggagaaccagatcagcaacgtg
gagagaggagcttttgatgagctgaaggagctggagagacttcgcctcaataagaaccat
ctcagccaatttccagagctgctgtttcagaagaacgaactcctctctcgactggatttg
agtgaaaatgccatccaggccatcccaaggagagccttcagaggagccacggtcctcaaa
aaccttcagctggataaaaaccacatcagctgcatcgaggagggagcgttcagagctctg
aggtctctggaagtactgacgctgaacaacaacaacatcagttctattccagtctccagt
ttcaaccacatgccgaagctccgcacctttcgtctgcactctaactctctccgatgtgac
tgtcacctggcctggttgtctccttggctgaggcagcgagcgtctttaggactttacact
cagtgcagcgccccccccactctgaggggcctgaacctggccgagttgagaaagagcgac
ttcgcctgctcaggaaatggcggcagtgcgttcgtgcagccgtgcagcctggcgtcgggc
tcgtgtcctccgatgtgttcctgcagcaacaacatcgtggactgtcgagggcggggcctc
accgccatcccagctcaccttcctgaggccatgaccgagatacgtttggagcagaatggc
atcaagtcggttcctccgggcgccttcacctcctacaagaagcttcgtcggatagacctg
agtaacaaccagatatctgagattgctcctgatgctttccacggcctccgagctctcaac
tccctggtgctgtatggtaataagatcacggagcttcccagcggagtgtttgatggcctt
tcctctgtggagctgctgctgctgaatgccaataagatccactgcatcagagcgtccgtg
ttcaaagatctggagaatctggctctgctgtcgctttatgacaacaagatccagagtctg
gctaaaggaaccttcagctccctgcacagcatccagacactccacctggcccagaacccc
ttcgtgtgtgactgtaatgtgaagtggctcgccgacttcctgcgctccaaccccatcgag
acgagcggagcacgctgcgcaagcccccgccgcctcgccaacaaacgcatcgcccagatc
aagagcagcaagttccgctgctccgccaaggagcagtaccacatcccaggtactgaggac
aggcatctcagctatgagtgtaacagtaagccggtgtgtcccgctaagtgtcgctgtgag
gccaacgtggtcgactgctccaaccttcgcctcaccaagttccccgaacacctgccctcc
tccaccgaagagctgcgtctaaacaacaacgacctctcggtgctcgaggccacccgagcc
ttcaagggtctgtcgcagctcaagaaaattaacctgagcaacaacaagatctcagagatc
gaggacggagcgttcgacggcgcctcgtcggtggtggagctccacctgacggccaatcac
ctggagtcagtgagagggagcatgttcagaggcatggagggactgcgcatgctgatgctg
aggaacaacaagatcagctgtatccataacggcagcttcaccggtctgggtaacgtccgt
ctgctctcgctctacgacaaccagctgagcaccatcctgcccggagccttcgacacgctg
cccaacctgtccactctgaatcttctggccaacccttttaactgtgactgccgtctgtcc
tggttcggagcgtggcttcggagccggcggatcgtgacggggaatcctcgctgccagagc
cccgccttccttagagaaatccccctgcaggacgtagctgttcctgacttccgctgcaga
gacggttcagttctggatgatatcagctgctcccccggccctcagtgtccctctcactgc
acctgcatggacacggtggtccgctgcagcaacaaacacctgctggctctgcccagaggc
ctcccccgcaacgtcaccgagctgtatctggatggtaaccagttcaccagtgttcctacg
gagttagccacgttcaaattcctgcagctcgtagatctgagcaacaataaaatcagctcc
ctgtcagatgactccttttccaacatgagccagctcaccactctgatcctcagttataat
tctctgcactgcatccctcctctggccctgggaggcctgcgctctctgagactgctctct
ctccatggcaacgacatctcagagctgcagcagggcatcttcagcgacgtggcctccctg
tctcacctagctattggagcgaaccctctgtactgtgactgccgtctgctctggctgtcc
gactgggtgaagagcggctacaaagagccggggatcgctcgctgtgcggggcctggaggg
atggaggggaagctgctgctcaccacgcccgccgacaagttccagtgtctgggtccggta
gaggcgtctgttcgggccaaatgcagcccatgtgtgtctactccctgccagaaccagggt
gtgtgtcaagtcaacgaaactgagctgtacacttgcacctgcaaatctggcttcacgggt
aaacactgtgagaccccggtggatgcgtgtgtcagtaacccctgcaccaacgcaggactc
tgcattagtgacgaacagacccgaggcttcagctgtgcatgtgccttcggtttccatggc
acgttctgcgaggtgaacgtggacgactgcgaggaccacggttgcgagagcgacgccacc
tgtgtggacggagtcggaaactacacctgcgtctgtccgccaaactacaccggtctgttt
tgtgaagaactagaggacgtttgttctccaggtagaaacccctgtcagcatcagtccacc
tgcatcagcactctgaccggcaccaggtgtgtgtgtattccaggctgggtggggccaaac
tgcagtatagattataatgagtgtgtggaccatcgctgtcagaacggcgctcagtgtgtg
gaccatctggacggatacagctgcgtctgcccgcagggattcagcggagagttttgtgag
gcggcggctctcccccccccgccgctctgccagctgtcggcgtgtcagaacggcgccccc
tgtgtgcaggaggcgggcgtcgcggtgtgcgagtgtctgccgggcttcgagggggatcgc
tgccagaaactggtcagcgtgaacttcgtggatcgagattcatacgttcagctgcaggac
gtcaagaactggcctcaagccaacatcacgctgcaggtctcaacagcagaggataacggt
atcttgctctacaacggagacaacgagccaatcgctgtggagctccatcagggtcacgtc
agagtcacatatgacccgggaaatcagcctgccaccactatctacagcactgagacggtg
aatgacggtctgtttcacacggtggagctggtgacctttaaccggatgttgaacctgtcg
gtggacggaggcgagccgacgaccctcgacagccaggagggccggagccagcggggggcc
ggggacgcccctctgtacgtgggaggaatgcctgaggcggtgctggactcctctcaccgt
ctctcctctcagacgctgaacacctccagcttccacggctgcatcaggaatctgtacatc
aaccacgagctgcaggacttcacccgcagccgcatgaaccctggagtggagccgggctgc
cagccgtgccggaaactcttctgtctgcacggcgtctgccagccccacgcagagcagggt
ccccagtgtcactgccagccaggctggacgggaccactctgtgatcagccaatcacagcg
gaccttactgcagcggagactgtcaccatggcaaccggtgtcaacccgtgtgaaggcagc
aagtgtgtcaagggtgtgtgtgtggcggtggacgctcagacgtaccgctgtgactgtgag
gagggattcacgggagagagctgtgatatcgagaccccgtgtcgtggggagccggttcga
gacgtccaccggctgcagcgaggtctcgtcctctgccagacctccaagcctttctcctgg
gtcgattgtcggggtcgctgccaggccggctccatgaccgccgcccactcctgctgcgcc
cctctgaggctccggcgccgcaggttgaccttcgagtgcgacgacggcacctcgtttacg
caggacgtggagaagcctgtggagtgtggctgcaaggagtgtgtgtag
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integrated database retrieval system
