Trematomus bernacchii (emerald rockcod): 117484974
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Entry
117484974 CDS
T09643
Name
(RefSeq) voltage-dependent calcium channel subunit alpha-2/delta-1-like isoform X1
KO
K04858
voltage-dependent calcium channel alpha-2/delta-1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04010
MAPK signaling pathway
tben04260
Cardiac muscle contraction
tben04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117484974
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
117484974
04261 Adrenergic signaling in cardiomyocytes
117484974
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tben04040
]
117484974
Ion channels [BR:
tben04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117484974
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VGCC_alpha2
VWA_N
VWA
dCache_1
VWA_2
Cache_3-Cache_2
MCP-like_PDC_1
MinC_N
DUF2201
Motif
Other DBs
NCBI-GeneID:
117484974
NCBI-ProteinID:
XP_033989396
LinkDB
All DBs
Position
Unknown
AA seq
1088 aa
AA seq
DB search
MDYSVCLLLLLSTISSVSTGQFPTAQMVKEWVDQMQKELISLTDTASGMENLIQIYHKHR
PHFSIETNNAQELVATAAGNIEKLLTNRSQALRKLAVEAEKLQMEHVWRDDNELDNIDYY
NAKDDLNETEEVKGRKNRYLPDDFEVDPDFKRLVSYNTTAVHIPTDIYEGSTIILNELNW
TEALEDIFRKNKEEDPSLLWQVFGSATGLARYFPASPWIDSSTSANKIDLYDVRRRPWYI
QGAASPKDMLILVDASGSVSGLTLKLIKTSVSKMLETLSDDDYVNVVYFNDKAAYASCFE
NLVQANVRNKRVLKDAVKDITAKGITNYRGGFELAFEQLAQTNVSRANCNKIIMLFTDGG
EERAEEIFKKYNPKQAVRIFTFSVGQHNYDKGPIQWMACANKGYYYEIPSIGAIRINTQE
YLDVLGRPMVKAEKKFKQVQWTNVYLDALELGLVITGTLPVFNKTNTGSKKTQNQLILGV
MAIDVSLEDIKRLTPRFTFGPNGYYFAIDPNGYVLLHPNLQPLTAKFHEPVTLDFLDAEL
ENEIKVEIRKKMIDGNTGSHTISTLVKSQDERYIDASQRTYTFAPVKGTDYSLALVLPTH
SLHYIRANIADTITQAKSFLGKDVSESLMADKFDEYGYTFIAPRVYCKDLKPPDKNKNKN
NTEFLVEFNDYIDTKTPNNPMCNVELVNRLLLDAGITSTLIKHWKGTDLQPGVVARFVAT
DGGITRVFPKSAGLDWQEEAETYESSFYKRSLDNDLYIFTPTPYLSKANSTDDTVLVSKA
VNINVDGIALKPAVVGIKLDIGAWMTSFINTTQKINCNDEICGCQRNDVYVDCVLLDDGG
FLVMSNRDEHIEQIGRFFGGMDPILMFNLVNSSLFTFKKTFDYQSLCDPEKEIKGAAGLR
SVYVPTIADILNLGWFATAAAWSILQQLLVSITFPNFLNAAEIDEELSDARLKEVCITEQ
TQYYFETDNLSFRGTIDCENCTRLYHAEKLPNTNLVFIIADAKLTCSSCDTKPLIQDEQK
SNGPDPCEMAQNPRYRKGPAVCLDNNEHEKDPDCGGASSLSPSLWLMVGLQLVLLWVLTG
SRPHAIPS
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atggattactcagtctgcttacttttactcctgtcaaccatttcgtctgtgtcgaccgga
caattccccacagcgcagatggtaaaggaatgggtggaccagatgcaaaaagagctgatc
tcattaacagacacagccagtggaatggagaacctaatacagatatatcataaacacaga
cctcacttcagcattgagaccaacaacgcacaggaactggttgccacagctgctgggaat
atagagaagctgctgactaaccgctcccaagctctgaggaaactggcagtggaagcagaa
aagttacagatggagcacgtgtggagggacgacaacgagctcgacaacatcgattactac
aatgccaaagatgatcttaacgagacagaagaagtaaaagggaggaagaaccgatatctt
ccggatgatttcgaggtggatccggacttcaaacgacttgtctcgtacaacaccaccgct
gtgcacatccctacggatatttacgaaggctctaccatcattttaaacgagctaaattgg
acggaggccttggaggacatattccggaaaaacaaagaggaagatccttcactcctctgg
caggtgtttggctctgcaaccggattggctcgatacttcccagcatccccttggatagac
tcgagcacttcagccaataagatcgacctctacgatgtgcgcaggcgaccgtggtatatt
cagggggcagcgtcacctaaggacatgctgatcctggtggatgcgagtggcagtgtatct
ggtctcaccctcaaactcatcaaaacgtccgtcagcaagatgctggagaccctttctgac
gatgactacgtgaacgttgtctacttcaatgacaaggcagcgtatgcatcgtgctttgag
aacctggtgcaggccaacgtgcgcaacaagagggtgctgaaagatgccgtgaaggacatc
acagccaagggaatcaccaactacaggggcggcttcgagctggccttcgagcagctcgca
cagacgaatgtgtcaagggcaaactgtaacaagattatcatgctgttcactgacggagga
gaagagagggcagaggagatctttaaaaaatacaaccccaagcaagcggtgcgcatcttt
acattttcagtaggtcaacacaactatgataaaggaccaatacagtggatggcctgcgct
aataaagggtactactatgagatcccatctataggagcaatccggatcaacacccaggag
tatttggatgtgttaggcaggcccatggtgaaggctgaaaagaaattcaagcaggttcag
tggaccaacgtctacctagatgctttggaactcggcctggtgattactggaactctgcca
gtcttcaacaaaaccaacacaggctcaaagaaaactcaaaaccagctcatcttgggggta
atggctattgatgtctccctagaagatatcaagagactgacgcctcgctttacttttgga
ccaaacggctactactttgccattgaccccaatggatatgtgctgctccaccctaatctc
cagccactgactgccaagtttcatgaacctgttacactggacttcctggatgcagagctg
gagaatgagatcaaagtggagataaggaagaaaatgatagacggcaacacagggagtcac
acaatatcaacattggtgaaatcccaagatgagcgctacatcgacgcgagtcagaggact
tacacctttgccccagtgaagggcacagattacagcctggccctggtgcttcctacccac
agtttgcattacattcgggccaacatcgccgacaccatcacccaggcaaaatcgtttttg
gggaaagatgtttctgaaagcctgatggcggacaagtttgatgaatacggctatacattc
attgcaccgagggtgtactgcaaggacttaaagccacctgacaagaacaagaacaaaaac
aacaccgagttcctggttgagttcaacgattacattgacacaaagactccaaacaacccc
atgtgtaatgtggaactggtgaaccgattgctgctggatgctgggatcacatcaactctg
atcaagcattggaaaggaactgatttgcagcctggtgttgttgccagatttgttgccacc
gatggagggatcacccgagtcttcccgaaaagtgctgggctcgactggcaagaagaagca
gagacgtatgagtcaagcttctataagagaagtttggacaatgatctgtacatcttcact
ccaacaccctacctcagtaaagcgaactcaactgacgacacagtcctggtgagcaaagca
gtaaacatcaatgttgatggtattgcactcaaaccagctgttgtcggcattaagttggac
attggtgcctggatgacaagcttcatcaacaccacacagaagatcaattgtaatgatgag
atctgtggctgtcagcgaaacgatgtgtatgtagactgtgtccttctggatgacgggggc
ttcttggtgatgtccaatcgggatgaacatattgaacagatcgggcgcttctttggtggt
atggacccgatcctcatgtttaacttggtcaactcatccctgttcacctttaagaaaacc
ttcgactaccagtcgctctgtgaccctgagaaagagatcaagggggcggcaggcctgcgc
tccgtctatgtgcccaccattgcagatattttgaatttgggatggtttgctacagctgcg
gcgtggtcaatactgcaacagttactggtcagcatcactttccccaatttcctgaacgca
gccgagattgatgaggaattgtcagacgccaggctgaaagaggtctgcatcacagagcaa
actcaatactactttgagaccgacaacctgtccttcagaggcacaatcgactgtgaaaac
tgcaccaggctctaccacgctgaaaagctgcccaacacaaacctggtcttcatcatcgct
gatgcaaaactcacctgctcgtcatgtgatacaaagccgttaatacaggacgagcagaag
tctaacggtcctgatccctgtgaaatggctcagaatcctcggtataggaaagggcccgcg
gtctgtcttgataacaacgaacacgagaaggaccctgactgtggcggggcgtccagcctg
agcccctcactttggctgatggtgggccttcagctggttctgctctgggttttgactggc
tccagaccccatgccatcccgtcatga
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