Trematomus bernacchii (emerald rockcod): 117485400
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Entry
117485400 CDS
T09643
Name
(RefSeq) protocadherin gamma-C5-like isoform X1
KO
K16497
protocadherin gamma subfamily C
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117485400
Cell adhesion molecules [BR:
tben04515
]
Cadherins
Protocadherins
117485400
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_tail
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
117485400
NCBI-ProteinID:
XP_033989812
LinkDB
All DBs
Position
Unknown
AA seq
1009 aa
AA seq
DB search
MGNHFNGLGMTKTMGYRDWRWQALWWHHLFLLWTTINGQTRYSIPEELKQGSVVGNLAKD
LGLGLSDIFDRKLRVASEAGEQYFSVDAGKGELLVNDRIDREALCGPSAICVLTLQVVID
KPLQLHRVEVEIQDVNDNSPRFPSQEITLQIAESTAAGARFPLEIAQDLDVGGNSVRSYT
LSKDDFFSLKIKDISGGRKVPELVLSKSLDREKKNVHQLQLTAIDGGTPVKSGTSQITIN
VLDNNDNFPVFENNVYKVSVSENSIQDASILKLTAEDTDEGPNGVVEYSFGMHTPDMVSS
MFDINSLTGEIRLIGKLDYETIANYEIDISARDKGTPGMEGHCTIHIEVLDENDNAPNIL
MTSQPNSVPEDAPRGTVVALISARDLDSGDNGKVTLQLPMSSPFNLKPSFSDNYALVTGG
ALDRETFSEYNIEITATDSGSPPLSTKKIINVNITDVNDNPPVFSQPTYALYLKENGVPG
SILYSVSASDLDVGENAKISYSILDSKVQDVSVSSYVYINSDNGSIYSMHSFDYEKLKVF
QIQVQAKDQGSPSLSSNTTVHVFILDQNDNAPAVIYPSSAVLGSLSHQRMSRSAKAGHLV
TKVTAVDADSGHNAWISYKLAEATDASLFTVNLYTGEVRTKRAASEQDDSSQRLLIEIKD
DGEPMQSATVTVSILLEDGLHEPILDLRQKTAEPSRKTGRITLYLILSLASVSVLSLVTF
LILAVKCMRNSSSSGSCCMRRSDCDNYKNPNRNMQIQLNTDGPIKYVEVLGGDMMSQSQS
FRSCMSPMSEYSDFTMIKPSSTTDFTEVISVLDASLPDSTWTFESQQQKPPNNDWRFTQG
QRPGPSGPHMPYGTHIRWTPKSGTSATGGPEVAMGTGPWPQPPTEAEQLQALMAAANEVS
EATATLGPGTMGLSTRYSPQFTLQHVPDYRQNVYIPGSTATLTSNPQQQQQQATAQQAAQ
QALPPAQMAAQMSAQMSAQMSAQMSPQPEPPKAAQTPASKKKSTKKEKK
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggggaatcattttaacggattggggatgacaaagacaatgggatacagagactggaga
tggcaggcgctttggtggcatcatttatttctcttgtggactacaataaacggacagact
cggtacagcatcccggaggaactaaaacagggctcggtggtaggaaatctagccaaagat
ctgggtctgggactctctgacatttttgatcgtaagctgcgtgtcgcctctgaggctgga
gagcagtatttcagtgtcgatgcggggaagggcgagctgctggtgaatgacagaatagac
agagaggctttatgtggaccaagcgcgatctgtgtgttaactctgcaagtggtgattgat
aaaccgttacaattgcaccgagttgaggtggaaatacaagatgtcaatgataattctcca
cggttcccttcgcaggaaataacattacaaatagccgagtcgacagcagcgggggcacgt
tttccattggaaatcgcgcaagatcttgatgttggaggaaattcagtgaggtcttacact
ttaagtaaagacgatttttttagtttaaagataaaggatatatctggtgggaggaaagtc
ccagagctagtgttgtctaaatcactcgacagagaaaaaaaaaatgttcatcagcttcaa
ttaactgctattgacgggggaaccccagtcaaatctgggacatcacagataactataaat
gtgctggataataacgataattttcctgtatttgaaaacaatgtttacaaggtctctgta
agcgaaaatagcatacaagatgcatctatcctaaaacttacagctgaggacaccgatgaa
ggtcccaatggagttgtagaatattcatttggaatgcacacaccagatatggtctcatca
atgtttgatattaattcattaaccggggaaatacggctcatagggaaattagattacgaa
acaattgcaaattatgaaatagacattagcgcaagagacaaaggcactccaggaatggaa
ggacattgtactattcacattgaagtgttggatgaaaacgataatgctccaaacattctt
atgacatctcaaccaaactctgtgcctgaggacgcaccacgtggtacagtggttgcttta
atcagtgcacgggaccttgattccggtgataacggtaaagtgacattacaactccctatg
agttcaccttttaatctgaaaccatctttttcagataactatgcactggttaccggaggt
gctttagaccgagagactttctcagagtataatatcgagataacagccactgattcaggc
tctcctcctctgtcgacaaagaagattataaatgtcaatattactgatgtaaatgacaac
cctcctgtattcagtcaaccaacatatgcactttatttaaaagaaaatggggtgccaggc
tctatactgtactccgtatcagcatctgatctggatgttggtgaaaacgcaaaaatatcg
tactccatcttggactctaaagtgcaggacgtttctgtctcgtcttatgtttatattaac
tcagataacggcagcatctacagcatgcactcgtttgactatgagaaactgaaggtgttt
cagatccaggttcaggcaaaggatcagggctccccgtctctcagcagcaacaccactgta
catgtttttattctggaccagaacgacaatgcccccgctgttatttacccctcctccgct
gtcctgggctccctctctcaccagaggatgtcccgctccgctaaagcgggtcacctggtt
actaaggtgacggccgtggacgctgactcgggccataacgcctggatctcctacaaactg
gcagaggccacagacgcctctctgttcactgtcaacctgtacacaggggaggtgaggact
aaacgcgctgcctccgagcaggacgactcctctcagaggctgcttatagagatcaaggac
gacggggaaccgatgcagtccgccaccgtcacggtgtccatcctgctggaggacggcctc
catgagcccatcttagacctccgacagaaaacggccgagcccagcaggaaaactgggaga
atcaccctttatttgattctctctctggcctccgtgtccgtgctgtctctggtgactttt
ctcatcttagcggttaaatgcatgaggaacagcagcagcagcggtagttgctgcatgaga
cgcagcgactgtgataattacaagaaccccaacagaaacatgcagattcagctcaacact
gatggacctataaagtacgtggaggtcctgggaggagacatgatgtctcagagtcagtcc
ttcaggtcctgcatgtctccaatgtcagagtacagtgatttcactatgattaagcccagc
agcaccactgactttacggaggtgatcagtgttctggatgcgtctttacccgacagcacc
tggacctttgagagccagcagcaaaagccccccaacaatgactggcgcttcactcaggga
cagagacccggacctagtggtccccacatgccatacggtacacacatacgatggacgccg
aagagtgggacaagtgcaaccggaggacccgaggttgccatgggaactggcccctggccc
cagcccccaactgaggctgagcagctccaggccctgatggctgcagctaacgaagtgagc
gaggctacggccaccctgggacccggcaccatgggcctgagcacccgctacagcccccag
ttcaccctgcagcacgtgcccgactatcgccagaacgtctacatccccggtagcacggcc
accctcacctcaaacccccagcagcagcagcagcaggccactgcccagcaggcagcccag
caggcgctgcccccggcccagatggcggcccagatgtcggcccagatgtcggcccagatg
tcagcccagatgtcgccccagcccgagccccccaaggccgcccagacccctgcctccaag
aagaagtctaccaagaaggagaagaagtag
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