Trematomus bernacchii (emerald rockcod): 117486814
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Entry
117486814 CDS
T09643
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger protein GLI2-like
KO
K16798
zinc finger protein GLI2
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
117486814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117486814
Transcription factors [BR:
tben03000
]
Eukaryotic type
Zinc finger
Cys2His2 GLI-like
117486814
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C2H2_15
zf-H2C2_2
zf-C2H2
Zap1_zf1
FOXP-CC
zf_C2H2_ZNF292
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
117486814
NCBI-ProteinID:
XP_033991265
LinkDB
All DBs
Position
Unknown
AA seq
1293 aa
AA seq
DB search
METSRASERKDKMDGSGFPELHKKPSETPAPHHHIFPSFHTPIPIDMRHHEGRYHYEPHN
INHMHGPTGLSDVSLIRLSPSDSPFSPPHPFLPPHMEQFLRPSLSMISAARGLSPAELAV
EHLKDRGLFXPPPPPAEFYHLMSHRSPYYGDLLLGGGGVGAEYISPMEVSRFSGPRLTPR
LGRKRAMSVSPLSDGSIDLHTMIRTSPSSLVAYINNSPSYGHLSVGGLSPSFPFPHPLTP
LSYQHLLTHHQRGGLGAFGHTPPLLHPPSSFCSRPXPPSAHSDLNTKNHGGDPSVSSTVD
PVVTKRSKVKSEGAGLRPLSPCSPKHRGTFLDLKEDAERDDFKAEPDAVYETNCQWENCS
QTHDTQQQLVHHINNDHIHGEKKEFVCRWDECSREQKPFKAQYMLVVHMRRHTGEKPHKC
TFEGCCKAYSRLENLKTHLRSHTGEKPYVCDHEGCNKAFSNASDRAKHQNRTHSNEKPYV
CKIPGCTKRYTDPSSLRKHVKTVHGPEAHVTKKQRSDVPPRPPAPKENGENEAGNRERVH
GEDKMSDNSSLGGREDYLHVTSIKTENSVMYQSSGQSSCSSEPSPLGSATNNDSGVEMAA
PSGGSVGDFSPLEDLGYEDTVGGLAVMGLHHRKHFGITMHLKKETLKTARDSCRWAGNPT
VLGTKLPPIPAGSLFGTGGGPVSFPGSGCGDLSKATLLERRDSTSSTLSSMYSRRSSGIS
QCFSSRRSSQSSQFGCNRPSSNDSYDPISADMSRRSSQNSQFGGGNGPLSLTPAQHYRLK
AKYAAATGGAPPTPLPNMDRMNALFEDYQESSATKRDRVSREYNSYSTRTLMPHEVPSTL
PRRASDPVRRPDYPTRPHMQRYNSMGTLTGAGSRQPPPAADCRPQQGCLHQDGSPHRYPC
SISENIPVGRITGDIPEEGVMQPDPNQAHFQGTPNPQHQQSYYQRRMAVVRTNMNLPHQV
VASSNMGASSPRDSKVSLGQMDASELCSKAQARGNLAVLQQNFNDLSSNQQMMQNHVNTT
RCKQLEPEQGEGCLQLSNLNLSPCRFKESLYDRNGNSTYPVKVNLPSATCKQEPVHLADA
GFQRVQVKVEDCDESIMISDQQNCNMTSQNPLHLHPTPPTGPRPLTRHLSGSRHQSNANQ
DVASALPGGVLGLHCSENSEDNALFYTGQIQVFEHNGNFDHLACPVVNVPLFESNAASSN
RAPVDGSLTPEQIDFDCMLEDDDDDDDHSSVMSGTLSPGLLQSFSRSSSRLTTPRNSVTL
PSVPQGTGNMAIGDMSSLLSALAEESKFLNSMS
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atggagacatcgagagcctcggagaggaaggacaagatggacggcagcggattccccgag
ctgcacaagaaaccctcagagactccagcgcctcaccaccacatcttcccctccttccac
acccccatccccatcgacatgcggcaccacgagggccgataccactacgagccgcacaac
atcaaccacatgcacggtcccacaggtctctcggacgtgtccctgatccgcctctcgccc
tctgactccccgttcagccctcctcaccccttcctccccccccacatggagcagttcctg
cgcccctccctctccatgatctctgcagccagaggactcagccctgcagaactggccgtg
gagcacctgaaggatcgaggtcttttcnngccccccccccctcctgctgagttttaccac
ctgatgagtcatcgcagcccttattatggagatctgctgctgggggggggaggagtgggg
gccgaatatatctcccccatggaggtctctcggttctcggggcccagactgactcctcgt
ctcggcaggaagcgagcgatgtcagtctctccgctctctgacggcagcatcgatctgcac
acgatgatccgaacgtcgcccagctcgctggtcgcctacatcaacaactctccctcctac
ggtcacctgtcagtgggggggctcagcccttccttcccctttcctcaccccttgactcct
ctcagctaccagcacctcctcacccatcatcagagggggggtctgggtgcttttggacac
accccccctctcttgcatcctccctcctcgttctgcagccgccccnnccccccctccgct
cacagcgacctcaacacaaagaaccacggaggagacccgtccgtcagcagcaccgtggac
cccgtcgtcaccaagaggtcaaaggtcaagtctgagggggcgggacttaggccgctgtct
ccctgttcaccgaaacacagagggaccttcctggacttaaaggaggacgctgagcgggac
gacttcaaagcggagccggacgccgtgtacgagacgaactgtcagtgggagaactgcagc
cagacgcacgacacgcagcagcagctggtgcaccacatcaataatgaccacatccacgga
gagaagaaggagtttgtgtgccgatgggacgagtgttcccgggagcagaagcccttcaaa
gctcagtacatgctggtggttcacatgaggagacacacgggggagaagccacacaagtgc
acgtttgagggctgctgtaaggcgtactctcgtctggagaacctgaagactcacctccgc
tctcacaccggagagaagccgtacgtctgcgaccacgaaggctgcaacaaagccttctcc
aacgcctcggaccgcgccaagcaccagaaccgcacacactccaacgagaaaccgtacgtc
tgtaagatcccgggctgcacaaagcgctacacggacccgagttccctgaggaaacacgtg
aagacggtgcacggcccggaggctcacgtcaccaagaagcagcgcagcgacgtgcctccg
aggccgccggcgcccaaagagaacggagagaacgaggcgggaaaccgagagcgagtccac
ggggaagacaagatgtccgacaacagctccctcggtggcagagaggactacctgcacgtc
acctccatcaagacggaaaactctgtgatgtatcagtccagcggtcagtcatcatgtagc
agcgaaccgtccccacttggcagcgccaccaacaatgacagtggagtagaaatggcggcg
cccagtggggggagcgtgggggacttcagccctctggaggacctgggatatgaggatacc
gtcggggggctcgcggtgatgggtctccaccatcgaaagcactttggcatcaccatgcat
ctaaagaaagagacgctgaagacggcgagggactcgtgtcggtgggccggaaacccaaca
gtcctcggcaccaaactgcctcccatcccagcagggtccttgtttggtacgggtggtggt
ccggtgtccttccctggttccggctgtggtgatctgagtaaagcgaccctgttggagcgc
cgtgacagcacctccagcaccctgagctccatgtacagccgccgatcttcaggaatctcc
cagtgtttctccagccggcgctccagccagtcctcccagttcggatgcaaccgccccagc
tccaacgactcctacgacccaatatctgcggacatgtcccggcgctccagtcagaacagc
cagtttgggggaggcaacggtcctctcagcctgacccccgcccaacactaccgcctcaag
gcaaagtacgctgccgctacaggaggtgcaccgcccacacctcttccaaacatggaccga
atgaatgccctgtttgaggactaccaggaatcctccgctacaaaaagagaccgggtttcc
agagagtataacagctactccacacggaccttgatgccccacgaagtcccgtctaccctc
ccccgtcgagccagtgatccagtgagacgccccgattatcccacaaggccacacatgcag
cgctacaacagcatgggcaccctgaccggagcaggatccaggcagccaccgcctgcagca
gattgcagaccccagcaaggctgcctccatcaggatggtagtccacaccgatacccttgc
agtatttcagagaatatacccgttgggaggataacgggtgacattcctgaagaaggtgtg
atgcagcctgacccaaatcaagcccattttcaaggtacccccaatccccagcatcagcag
tcatactatcagaggaggatggctgttgtgaggaccaacatgaaccttccccatcaggtt
gtagcctcgtccaacatgggtgcatcttcaccgagggacagtaaggtctctttgggtcaa
atggacgccagtgagctctgctccaaagcacaggccagagggaacctggctgtcctccag
cagaactttaacgacctcagctccaaccagcagatgatgcagaaccacgttaacacaacg
agatgcaaacagctggaaccagaacaaggagagggctgcctccagttgtcaaatctcaat
ctgtctccgtgcaggtttaaggaaagtctctatgataggaacggtaactccacgtatcca
gtcaaggtcaacttgccaagcgctacatgcaaacaggagcctgtgcacttagctgatgct
ggatttcagcgcgtgcaggtcaaagtagaggactgtgatgaatcaatcatgatttcagat
cagcagaactgtaacatgacctcccagaatcccttgcacctccatccaacgccaccaaca
ggacctagacctctaactagacacctgtcagggtcaaggcaccaaagcaatgctaaccag
gacgtagcttctgctttaccaggtggcgttttaggacttcattgcagcgagaactctgag
gacaatgccttgttctacacagggcagattcaagtgtttgagcacaatgggaactttgac
catcttgcttgtcccgtggtgaatgtacctctttttgaaagcaacgcagcgtcgtccaac
agggcgcctgtggacggtagcttaactccggagcagatagactttgactgcatgctggag
gacgatgacgacgacgacgatcactccagcgtcatgtcgggaactttgagtccagggttg
ctccagagtttttcgcggagttcctcccgtctgacaacgcccaggaactctgtgacgttg
ccctcggtgccgcaggggacgggcaacatggcgatcggagacatgagctcgctgctttct
gctctcgccgaggagagcaagttcctcaactccatgtcgtag
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