Trematomus bernacchii (emerald rockcod): 117486952 Help Entry 117486952         CDS       T09643                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism tben  Trematomus bernacchii (emerald rockcod) Pathway tben04115   p53 signaling pathway tben04145   Phagosome tben04148   Efferocytosis tben04350   TGF-beta signaling pathway tben04510   Focal adhesion tben04512   ECM-receptor interaction tben04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:tben00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     117486952 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     117486952 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     117486952 (thbs1b)    04148 Efferocytosis     117486952 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     117486952 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     117486952 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     117486952 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:tben04131]     117486952 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:tben00536]     117486952 (thbs1b) Membrane trafficking [BR:tben04131]  Endocytosis   Phagocytosis    Opsonins     117486952 (thbs1b) Glycosaminoglycan binding proteins [BR:tben00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    117486952 (thbs1b) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C TSP1_ADAMTS EGF_3 Laminin_G_3 cEGF EGF TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  117486952 NCBI-ProteinID:  XP_033991444 LinkDB All DBs Position Unknown AA seq 1169 aa AA seqDB search MKLTGIFLLLMCWSCEGARVAESRDDNSVYDLFELVKVPKKNHGVTLVKGDDPYSPAYKI LNPDLIPPVPESAFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKKDGSGPVFEIVS NGKANTLDIVFSTENKQQVVSIEDADLATGQWKNITLFVQEDRAQLYAGCEEVNTAELDA PIQSILTLETPASSQLRIGKGAVKDRFMGVLQNVRFVFGASLEAILRNKGCQSSIRTDSL VLENLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLIGMFKELKGLGVVVKELSNELRQLTD ENKLIKNRIGIHSGVCIHNGIVHKNRDEWTVDDCTECTCQNSATVCRKISCPLLSCANAT IPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINSNCEGTSVQTR DCYLQECDKRFKQDGNWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKNCEGEGRQT EKCQKSPCPINGNWGPWAPWDTCTLTCGGGVQNRKRLCNNPESKYGGKECIGNPKDTQMC NKKACPVDGCLSNPCFAGAKCTSLPDGSWKCGKCPAGYAGNGIKCKDVDECKEVPDACFE FNGVHRCENTEPGYNCLPCPSRYSGPQPFGKGVEQAAAKKQVCTARNPCLDGSHDCNKNA RCNYLGHFADPMFRCECKPGYAGNGHICGEDTDLDGWPNSDLVCVENATYHCKKDNCPNL PNSGQEDHDKDGMGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNS NPDQTDTDNNGEGDACAVDIDGDGIINEKDNCPHVYNVDQKDTDLDGVGDMCDNCPLEHN PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND GVPDDKDNCRLAFNPDQLDSDGNGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRKFQ MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDDD YAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKMVNSTTGPGEHLRNALW HTGNTPGQVRTLWHDPKSVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGNIYDK TYAGGRLGLFVFSQEMVYFSDLKYECRDT NT seq 3510 nt NT seq  +upstreamnt  +downstreamnt atgaagttgacagggatatttttgcttctgatgtgttggagctgcgagggcgcgcgagtt gcagagagtcgagacgacaatagcgtgtatgacttgtttgagctggtcaaagtcccgaag aagaaccacggggtgaccctggtgaaaggagacgacccgtacagccccgcttacaagatc ctcaacccggacctgatccccccggtccccgagagcgcctttagggacctgatcgactcc atccacgccgagagggggttcctcctcctgctcaacttcaagcagttcaagcggaccagg ggctccctcctgaccgtggagaagaaggacggatccggacccgtgttcgagatcgtctcc aatggaaaggcgaacaccctcgacatagttttctccaccgagaacaagcagcaggtggtt tccattgaagatgcggacctggctacggggcagtggaagaatatcacgctgttcgtgcag gaggaccgcgcgcagctgtacgccggatgcgaggaggtgaacaccgcggagctggacgcg cccatccagagcatcctcaccctggagaccccggccagctcccagctacggatcggcaag ggagccgtgaaggacaggttcatgggggtcttacaaaacgtccggtttgtgtttggagcg tcactggaagcgatcctgcgcaacaaaggatgccaaagctctataaggactgactccctg gtcctggagaacctcaatggatcctcagcaatcagaacagagtacactggacacaagact aaggacctgcagatggtctgtggcttctcctgtgaggatctgatcggcatgtttaaggag ctgaagggcctcggtgtggtggtgaaggagctgtccaatgagctccgccagctgacggat gagaacaagctgattaagaaccgcattggcattcacagcggagtctgcatccacaacggc atcgtgcacaagaacagagacgagtggaccgtggatgactgcaccgagtgcacttgtcag aactctgctaccgtgtgccgcaagatctcttgccccctgctctcctgtgctaatgctact attcctgatggagagtgctgccctcgctgtggaacaccgagcgactatgcagaagacggc tggtcgccgtggtctgaatggacccattgttccgtgtcatgtgggcggggtatccagcag cgtgggcgctcttgcgaccgtatcaatagcaactgcgagggcacctctgtgcagacccgc gactgctacctccaggagtgtgacaagcgattcaagcaggacggcaattggagccattgg tcaccctggtcctcctgctccgtcacctgtggtgctggtgtaatcacccgtatccgcctt tgcaactcccccacccctcagcttggaggcaagaactgtgagggagaaggacggcaaact gagaagtgtcagaaatctccgtgcccaatcaatggtaactggggaccctgggctccatgg gacacctgcactctcacctgtggaggcggggtccagaatcgaaaacgcctgtgcaataac cctgaatccaaatacggtggcaaagagtgtatcggtaatcccaaagacacccagatgtgc aacaagaaagcctgtccagttgatgggtgcctgtccaacccctgctttgctggagccaag tgcaccagtttacctgatgggtcctggaagtgcgggaagtgcccagctggctacgcgggc aatggtatcaagtgcaaagatgttgatgagtgcaaggaggtcccagacgcttgctttgag tttaatggcgtgcaccgctgtgagaacactgagcctggctacaactgtctgccatgtcct tctcgctactcaggaccccaaccgtttggcaaaggtgtggagcaggctgctgccaagaaa caggtgtgcacagcccgtaatccctgcctcgatggaagccatgactgcaacaaaaacgcc cgttgtaactaccttggacactttgccgatcccatgttccgctgtgagtgcaagcccggc tatgctggcaacggccatatctgcggagaggacacagatctggatggatggcccaactct gacctggtgtgtgtggagaacgccacctaccactgcaagaaggacaactgtccaaacctc cctaactctgggcaagaagatcacgataaggacggcatgggagatgcctgtgacaacgat gatgacaatgatggcattcctgacgatagggacaactgcccattcgtttacaaccccagg cagtatgactatgaccgcgatgatgttggtgaccgctgcgacaactgcccttacaatagt aacccagaccaaacggacacagacaacaatggagagggagacgcctgtgctgtggacatt gatggagatggcataataaatgagaaagacaactgcccccatgtgtacaatgtcgaccag aaggacacagatctggacggcgtgggagacatgtgtgataactgccctctggaacataat ccagatcaggtggattcagatgatgaccgagtgggagacaagtgtgacagcaaccaggac atcgatgaggacggacaccagaacaacctggacaactgcccgtatatccccaacgccaac caggctgaccatgacaaagatggcaagggagacgcctgtgatcatgatgacgataacgat ggtgtccctgatgacaaggacaactgcagactggccttcaaccctgaccaactggactct gacggtaatggtcgtggagatgcttgcaaagacgactttgaccaagacaacgtgcctgac atctacgacgtgtgcccagaaaactttgacattagtgagacagacttccgcaagttccag atggttcctcttgaccccaaaggcacttcccagattgatcctaactgggtcgtccgccat caaggcaaagagctggttcagacggtcaactgcgaccctggaatcgctgtcggttatcac gagttcaattcagtggacttcagcgggactttcttcatcaacactgagagggatgatgat tacgccggctttgtgtttggataccaatccagttccaggttctacgtggtgatgtggaag cagattacacagacatattggtcgaacaaacccaccaaggcccagggctactctggcttg tccattaaaatggttaactccaccactggtccaggagagcacctcaggaacgccctctgg cacacaggaaatacaccaggacaggtccgcactctctggcatgaccccaagagcgttgga tggaaagacttcaccgcctacagatggcatctgatccacagaccgagaacaggacttata agagttgtgatgtacgaaggcaagaagatcatggcagattctggtaacatctatgacaag acatatgctggcggcaggctaggtctttttgtcttctcacaagagatggtatacttctca gacctcaagtatgaatgcagagatacctaa

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