Trematomus bernacchii (emerald rockcod): 117488356
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Entry
117488356 CDS
T09643
Name
(RefSeq) FYVE and coiled-coil domain-containing protein 1-like
KO
K21954
FYVE and coiled-coil domain-containing protein 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
117488356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117488356
Membrane trafficking [BR:
tben04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
117488356
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RUN
FYVE
TPR_MLP1_2
PUMA_CC
GOLD_2
Motif
Other DBs
NCBI-GeneID:
117488356
NCBI-ProteinID:
XP_033993085
LinkDB
All DBs
Position
Unknown
AA seq
1480 aa
AA seq
DB search
MASSSSVGDNQLQRIIRDLHDAVLELSKEHNDCGEPVTDDSANLHKFFYKLEYLLQFDQK
EKTTFLGQRKDYWDYFCDCLIKIKGANDGIRFVKSIPELKTSLGKGRAFIRYSLVHQRLA
DTLQQCLINQKVTSDWYYARSPFLKSHLTADIINHLYELNQIQFDVAARGYDLDADWPSF
ARRTLGNASSAFLWRPPSRCSSINSLVSSYSQVQEYLPIQDLNPSLLGGLDELVEPSSCS
IADNLRIELDQSELRQQELLVRVQELGKQADELKGVVKDLKGQLLATQKTAGPSVSTEAQ
SNQNTDNQDGANHLQICREAINGDLQNRLTVSENKNMELLSKLEESLKEKGQQTASYCDS
AWKIQELLDKVKTAEEERLEAKREAEDRARHSERLSQDLKLREEEMRISEEKLAEVRTGA
HCEREDALTRLEELQSAVGRIQGALSLKEKETGNLRAQLQDLQASLECRERKADDLRRRL
NKEREEVEQRCSMSYSQNEDLETKLRDVRKTLKNREKELAATSERTKHLEEQLEKLNVEK
ETLSSRLANNETVSSEKLQEYKTQCHNLMEINNKVLQTVKKSEGSITELTESRVALLDQL
ACLRASEKHLKSRVEAANLCVEDREKKLLDENLHWEEIAQKVLVQKDTSDAQIKNLEHEK
QERLELQSSLKKQLATTQQELDALTAKASKLEKNLNVSQRSQAELLEKVKDAEAKLREQT
VECGRQQARAEELENRSVELHHEKGAAESNEKMLHERPQKSSMETKDSPYRLVMAEAQLE
LNLREVQRLQDEVVELRAQHLAGADERMKVQALQEVTESSREDLRILAEQLKAQVEELNR
RHVDEILRSREREEALVRERDGEARARAGLAAEVTASREELNKLKLRYEALCLENSESKE
ALHRANTETAELGIQVCMLTAENEEARLRWEGLSTKLQELDEEASQEAERLNTCMEQLSQ
ENQRLLDQLHNQKGSSAIKQEMQVELSKAQQEAEAVQATSQEEIQALRFQLSSQTMSHDG
RVQTVNKETQEVKSQLTTEQEKVVDLENKFKQLEAENQRYCQQIEEKNIQMADSVNLIRP
KEDEIIHLKENLSSSQESLAAAQRTCQEMSENLRRATQDKQSFDLKTAAELDDLYRTKIN
LEERLVELIREKDVLWQKSDALEFEQKMRDEETERDVNFCLGCHTQFSWWLRKHNCRLCG
RPFCYYCCSNTVSTQQGGHRERCCIDCYNNHTAVVERHPQEEVTHSTPGTPFHRLLQAGK
AVTGASGASEGEKVDDGIFDIITEEEVSGVYDSDSLSFATACSPEHGQQGAAQLNSSASA
GDLTSEDNDDLNTSVQDAEICLLKSGDLTLSIPFTVDDISAFGDSSRELFIKSSCYSTIP
ITMSGPGPTVCWTFTSEPKSIAFSVVYRESTETPLEQAKVLIALTRCNSHKETIQGELKV
RNAGEYTLIFDNSFSRFISKKVQYQLSLDKPVVYDGTDLL
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctcatcagttggagataatcaactgcagaggataatcagagatctgcat
gatgctgtgttagagttgagtaaggaacacaatgactgtggtgaaccggtaactgatgat
agcgccaacctgcacaagttcttctataaacttgaatacctgctacagtttgaccagaaa
gagaagacaacctttcttggtcagagaaaagactactgggattacttctgcgactgcctg
attaagatcaagggagctaacgatggcatccgttttgttaaatccattcctgagttgaag
acatccctggggaaaggaagggccttcatacgctactcactcgtccaccaacgcctcgct
gacacactgcagcagtgtctcataaaccagaaggtcacaagtgactggtattatgcgcgg
agtcccttcctcaagtcccacctcactgctgacatcattaaccatctttatgagctcaac
cagatccagtttgacgtcgctgccagaggttacgaccttgatgcagattggccatcattt
gcaaggcgaacattaggcaatgcctcatcagctttcctgtggaggcctcccagtcgctgc
tccagcatcaacagtctcgttagcagctactcacaggtgcaggagtatcttccaatacaa
gacctgaatcccagtctcctgggtgggctcgatgaactggtggagccctcttcatgcagc
atagcagataacctgcgcattgagctcgaccaatccgagctcagacagcaggagctgctg
gtccgggttcaggagttaggaaaacaagctgatgagttgaaaggtgtggtgaaagacctt
aaaggccagcttttggccacccagaagactgctggcccctctgtatctacagaagcccaa
agtaaccaaaatacagataatcaggacggggcaaatcaccttcaaatctgtagggaagca
ataaacggtgaccttcaaaatagactcacagtgtctgagaacaaaaatatggagcttctc
tccaagttggaagaatcacttaaggaaaagggacaacaaacagctagctactgcgactcg
gcctggaaaatccaggaactcctggataaagtcaagacagctgaggaggagaggttggag
gcaaagagagaggcggaggacagagcaaggcactctgagcgtctgtcccaggatctgaaa
ctcagggaagaagagatgaggatcagtgaggagaagctggctgaagtaagaaccggagct
cattgcgaacgcgaggatgcgcttacacggttagaggagctccagagtgcagtcggtcga
attcaaggggcgctgagcttgaaagagaaggagacggggaacttaagagcacagcttcag
gacctacaagcgtcactagagtgcagagaaaggaaggcggatgacctaaggagaagactg
aataaggagagggaggaggtagagcagagatgtagcatgagttacagccagaatgaggat
ctagagaccaaactccgggatgttaggaaaactctgaagaacagagaaaaagagctcgct
gctacttcggagagaaccaaacatttagaggagcagttggagaagctgaatgttgagaaa
gagactctgagctctagacttgctaataatgaaaccgtttcctctgagaaacttcaggag
tacaaaacccaatgccacaatctcatggaaataaacaataaggttctccaaacggttaaa
aagagtgagggaagcatcacagagctgactgagagcagggtagccttgttagaccagctt
gcttgtttgagggcttctgaaaagcacttaaaatcccgagttgaggctgcaaatttgtgt
gtggaagatcgggagaagaagcttctagatgaaaacctgcattgggaggagattgcccag
aaggtgctcgtccagaaggacacatctgatgcgcaaataaagaatctcgagcatgagaaa
caagagcgtcttgagctccagtcctcattaaagaaacagttagcgacaactcaacaggaa
ctggacgcactcactgccaaagcttcaaagttggagaaaaacctcaatgtgtcccaaaga
agccaagcagagttacttgaaaaagtgaaggacgctgaggctaaactgagagaacagact
gttgaatgtgggcgtcagcaagcgagagccgaggagctggagaacaggagtgttgagctg
caccatgaaaaaggagccgcagagagcaatgagaaaatgcttcacgaaaggcctcagaaa
tcctcaatggaaaccaaagattccccgtacaggctggttatggccgaggctcaactggag
ctcaacctgagggaggtgcagcggctccaggacgaggtggtggagctcagggctcagcat
ctggcaggagccgacgagaggatgaaggtgcaggctctgcaggaggtgaccgagtcctcc
agagaggacctccgcatcttagcagaacaactgaaagcccaggtagaggagctcaaccgc
cggcatgtggatgagattctccgatcacgggaacgagaggaggctcttgttcgggagcgg
gacggtgaagctcgggctcgagccggcctggctgccgaggtgacggcctccagagaggag
ctcaataaactgaagctgcggtatgaagccctgtgtctggaaaacagcgaatccaaggag
gcgctccacagagccaacacagaaacagctgaactcggcattcaggtgtgcatgctaact
gctgagaacgaggaggctcgtctgcgctgggagggcctgtcaacgaagctgcaggagctg
gacgaggaggcgtctcaggaggcggagaggctgaatacctgcatggagcagctgagtcag
gagaaccagcgcctcctggatcagctccacaaccagaagggttcgtccgcaatcaagcag
gagatgcaggtggagctgagcaaggcccagcaggaggccgaggctgtgcaggcgaccagc
caggaggagatacaggcgctccgcttccagctcagcagccagaccatgagccacgacggc
cgggtccagactgtgaataaagagacacaggaagtgaaatcacagctgacgaccgagcaa
gagaaagtggtcgacttggagaacaaattcaaacagctcgaggctgagaatcagagatat
tgccaacagattgaggagaaaaacatccagatggccgattctgtaaatctcatccggccg
aaagaagacgagataatccatctgaaagagaatttatcaagttctcaggaaagtcttgca
gcggctcagcggacttgtcaggagatgagtgaaaatctacggagagccacacaggacaaa
cagagctttgatctgaagacggcagctgaactcgatgatctttaccgcacgaaaatcaac
ttggaagaaaggcttgttgaactgatcagggagaaagatgttctgtggcagaagtcggat
gccctggagttcgagcaaaaaatgcgggacgaggagacggagagagacgtcaacttctgc
ctgggctgtcacacccagttcagctggtggctccgcaagcacaactgcagactgtgtggg
cgtcccttctgctactactgctgcagcaacacagtgagcacgcagcagggcggccacagg
gagcgctgctgcatcgactgctacaacaatcacaccgcggtggtggagcgccaccctcag
gaggaagtgactcacagcacgccggggactcctttccatcgcctgctgcaggctgggaaa
gctgtgacgggtgcttcaggagcaagtgaaggtgaaaaggtggatgatggtattttcgac
atcatcacagaggaggaggtgagcggggtctatgacagtgactctctctcttttgccacc
gcctgctctcctgaacacggacagcagggggcagcacaactaaacagcagtgccagtgca
ggagacctcacatcagaagataatgatgacctcaacacttcggtacaagacgcagagatc
tgcctgctgaagtctggagacctcacgctctctatccccttcacggtggatgatatctca
gcgtttggggacagctccagagagctcttcataaagtccagctgctacagcaccatcccc
attaccatgagcgggcccgggccgacggtctgctggacgttcacctccgaacccaaaagc
atcgccttcagcgtggtctacagggagagcaccgagactccactcgaacaggccaaggtc
ttgatcgctctgacgcgctgtaactcccacaaagagaccatccagggggagctgaaggtc
aggaacgctggagaatacacactcatctttgacaactctttctcaaggttcatctcaaag
aaagtccagtatcagctgagtctggacaagcctgtggtctacgatggaaccgacctcctc
tga
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integrated database retrieval system
