Trematomus bernacchii (emerald rockcod): 117489646
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Entry
117489646 CDS
T09643
Symbol
kdm2ab
Name
(RefSeq) LOW QUALITY PROTEIN: lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
117489646 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117489646 (kdm2ab)
04121 Ubiquitin system [BR:
tben04121
]
117489646 (kdm2ab)
03036 Chromosome and associated proteins [BR:
tben03036
]
117489646 (kdm2ab)
Enzymes [BR:
tben01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
117489646 (kdm2ab)
Transcription factors [BR:
tben03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
117489646 (kdm2ab)
Ubiquitin system [BR:
tben04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
117489646 (kdm2ab)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
117489646 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
117489646 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
JmjC
F-box
LRR_6
Cupin_8
C1_1
Cupin_1
LRR_Zer-1
LRR_8
Motif
Other DBs
NCBI-GeneID:
117489646
NCBI-ProteinID:
XP_033995005
LinkDB
All DBs
Position
Unknown
AA seq
1297 aa
AA seq
DB search
MEDPHTRYSKRLRTGTRRRYQDDGISDDEIEGKRMFDLDEKLQCSRFNSELIKHMEGKDF
TFEYIQREGLREPIIFEAANGLGIQMPDSDFSVSDVKLFVGSRRIVDVMDVNTQKGIEMS
MAQWRRYYETPPSEREKLYNVISLEFSHTKLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNAIIDMHYPKVQKYCLMSVQGCFTDFHIDFGGTSVWYHILRGGKVFWLIPPTPQNLE
MYENWVLSGKQGDIFLGDKCFDCQRIELKQGNTFIIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYSIEDRTRVPAKFRYPFYYEMCWYVLERYLYCQTNISHLTPEFKKYSLGVG
LTKADMENIDSNRNGTSNGVDSDTENKEIKEEAVKEQDEEEAKETEAQHLLTPFELEGLW
NLLGKLEGLPEQKKCVPVGIMNPDALLDDMKTLLKGHVNDDAKLSYTGEPIVKWPKRPSW
YQPPTPPPPVIYRPRLGPKPLRSIKRSSISALRRRRVRCKRCAACCRKECGTCQFCHDMR
KFGGPGRMKKGCIMRRCLAPALPNTARCAICAEGESDESNPSTHSLMECSVCSQIVHRQC
NKEPGEGKINIDLPSCWECPKCYHGKDSGSESTSDEESGESEGSTALPPIKRAFREGIGV
GARRGTRSGSSSRPTALPPSQKLLLQHQQNRKRANALELRLKKRIKLERSKILTKQSSQE
RSPRSLCSRLPSRLRTATSRLSQGRGRGSTWAGAPPHPSSPGGTGSFQQQQQQQQQQQQQ
QQQQQSSLGLALEPKGEARRGRGRGVRLRGGGAGRGMRSGRSHEELEEETEDSSTSSSTN
SSSSSSDEEEGQNSGRGLDKENQPQSRREAAKEREEDLSEAANQNGAEEDEEESEQDGEI
GRKAGSNHKVTLQKPTRAQRDPSAIVPKLEAISPQTPPSTIHNQSRVLARPPIRNRGPDP
HSSKHARPHTPSGHTDTQERLEDSQKTRPAKLSNGASSSSTPDLPHLRIPLSALQEGGGE
AERENGASGPGCEREVWVSVFRYLSRADLCVCMAVCKNWYKWCLDKRLWARIDLSIKRTV
TPQALTGIIKRQPITLDLSWTNISKKQLNWLVGRLPGLKDLMLAGCSWLSISALCSSGCP
LLRSLDLRYADGVKDSQIRDLVTPPGCDNRSQLRSMQCLRLAGLDISDSTLRLVIRHMPH
LTKLDISHCNNLTDNSINLLTAVGSSTRNTVTELNLGGCSKLSDTCLKYLRRLACISLLD
LRGCNGVSRKACEAFIAELSVNMLYCLSDDKLIQRIS
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atggaggaccctcatacacggtatagcaaacgcctgcgtacagggacgcgacgccgctac
caagacgatggaatctcagacgatgaaattgaagggaagcggatgttcgacctggacgag
aagctgcagtgcagcaggtttaactctgaattgatcaaacacatggagggaaaagatttc
acatttgagtacatccagagggaagggctcagggagcccattatctttgaggcagccaat
ggccttggcatacaaatgccagactctgatttcagtgtgagtgatgtcaagttgtttgtc
ggaagtcgacgaattgttgacgtgatggatgtgaacacccagaaaggaatcgagatgtcg
atggctcagtggagacgctactatgagacgccgccatcagagagagaaaaactctacaac
gtcatcagtctggagttcagccacaccaagctggagaatctggtcaaacggccggcttcg
gtggacctcattgactgggtggacaacatgtggcctcgccatctcaaggagagacagaga
gactccactaacgccatcatagacatgcattatcccaaagtgcagaagtactgtctcatg
agtgtgcagggctgcttcacagatttccacatcgactttggaggcacttccgtctggtac
cacatcctgcgaggcggaaaggtgttctggctgattccacccacaccccagaacctggag
atgtacgagaactgggtgttatcaggaaaacagggagacatcttcttgggggacaagtgc
tttgactgtcagaggatagaactcaagcaaggaaacaccttcataatcccatcagggtgg
atccatgctgtgtacaccccagaggacacgttggtgtttggggggaatttcctccacagc
tttaacatccccatgcagctcaacatctacagcatcgaggatcgcacacgggtgccagca
aagttccgctaccctttttactatgagatgtgctggtacgtcctggagagatacctctac
tgtcagaccaacatctcccatctcactcctgagttcaaaaaatactccctgggcgtagga
ctgaccaaggctgacatggaaaacattgactccaacaggaatggcacctctaatggagtc
gacagcgacactgagaacaaggagataaaggaagaggcggtcaaagaacaggacgaagag
gaagctaaagagacagaagctcaacacctgctgactccctttgagctggaggggctgtgg
aacctcttggggaagctggaggggctgccggagcagaagaagtgcgtccctgtgggcatc
atgaaccccgacgccctgctcgatgacatgaagactcttctaaaggggcatgtcaatgat
gacgccaaactgtcctacactggagagcccatcgtcaagtggcccaaaaggccttcatgg
taccagccccccactccccctccccccgtcatttaccgtcctcgcttgggccccaagccc
ctgaggtccatcaagcgctcctccatctccgccctgcggcgcaggcgggtcaggtgtaag
cgctgcgccgcctgctgcaggaaggagtgcggcacctgccagttctgccacgacatgagg
aagtttggtggtccggggcgcatgaagaagggctgcatcatgagacggtgtctagcgcct
gccttaccgaacacagcgcgatgtgccatatgtgcagaaggggaatctgacgaatcaaat
cccagcactcactccctgatggagtgctctgtgtgctcgcagatagtccatcgtcaatgc
aataaggagcctggtgaagggaaaatcaatatcgatctgcccagctgctgggaatgtccc
aaatgttaccatggaaaagactcaggctcagagtctaccagcgatgaggagagtggagag
tcggagggctcaaccgctctgccaccgatcaaacgcgccttccgggaaggcatcggcgta
ggggcgagacgagggacacgtagcggttcctcctcccgacccacagctctcccaccgtct
cagaagctgctcctgcagcatcaacagaaccggaaaagagcaaatgcactggagctcaga
ctgaagaagaggataaaactagagcgcagcaaaatcttaacgaagcagtcgtctcaggag
cgttccccccgctcgctgtgctccaggctgccgtccaggctgcgcaccgccaccagcaga
ctctctcagggccgaggccggggctccacctgggccggagcgcctcctcaccccagctct
ccaggggggacggggtctttccagcagcagcagcagcagcagcagcagcagcagcagcag
cagcagcagcagcagtcttccctcggtctggcacttgagcccaagggagaggctcgccga
gggagggggagaggggtgaggctgcgggggggaggagcagggagaggcatgagaagtggt
agaagccatgaagagttggaggaggagacggaggacagcagcaccagcagcagcaccaac
agcagcagctccagcagcgacgaggaagaggggcagaacagcgggagggggctggataag
gagaaccagccacagtcgaggcgagaggcagccaaagagagagaggaggacctgagcgag
gcggccaaccaaaacggagcagaagaggacgaggaggagagcgagcaggacggtgagatc
gggagaaaagctggctcaaatcataaagttacactccaaaagccaaccagagcccagcgg
gacccgtcggccatcgtccccaaattggaagccatctcccctcaaactcccccttccaca
atacacaaccagagcagagtcctcgccagaccccccattaggaaccgcggtcctgatcca
cactccagtaagcacgcacgcccacacacaccgagcggacacacagacactcaagagagg
ctggaggactctcagaaaaccaggccggctaaactgagcaacggcgcctcctcttcgtcg
acccccgatcttccacatctgcgcatccctctgtccgccctgcaggagggggggggcgag
gcggagagggagaacggagccagcgggccgggctgcgagagggaggtctgggtctctgtc
ttccgttacttgagtcgagcagatctctgcgtctgcatggccgtctgcaagaactggtac
aaatggtgtttagacaagcggctatgggcccggattgacctgagcatcaaacgcaccgtg
actcctcaggctctgacgggcatcataaagagacagccaatcacactcgatctctcttgg
accaacatctctaaaaaacagctcaactggctcgttggccgacttcctgggctgaaggat
ctgatgctggccgggtgttcatggttatctatttccgctctctgctcctctgggtgccct
ctcctccgctctcttgacctgcggtatgcagacggagtcaaagactctcagatcagggat
ctagtcacccctccaggttgtgacaatcgcagtcagttgcgcagcatgcagtgtctgcgt
ctagccggcctggacatcagcgactccaccctgcgcctggtgatccgccacatgccacat
ttaaccaaactggacatctcccactgcaacaacctcacggacaactccatcaacctgctg
actgcagtgggctcctccacccggaacaccgtcacagaactcaacctgggaggttgcagt
aaactgtccgatacgtgtctaaagtatctccgccgcctcgcctgcatctcgctgctcgac
ctgcgaggctgtaacggcgtctcccgaaaggcctgtgaggccttcatcgccgagctgtca
gtcaacatgctctactgcctatcggatgataaactgatccagaggatatcctag
DBGET
integrated database retrieval system
