Trematomus bernacchii (emerald rockcod): 117489970
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Entry
117489970 CDS
T09643
Symbol
si:ch1073-335m2.2
Name
(RefSeq) msx2-interacting protein isoform X1
KO
K25100
Msx2-interacting protein
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
117489970 (si:ch1073-335m2.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tben03036
]
117489970 (si:ch1073-335m2.2)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
117489970 (si:ch1073-335m2.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
SPOC
RRM_5
RRM_7
Motif
Other DBs
NCBI-GeneID:
117489970
NCBI-ProteinID:
XP_033995464
LinkDB
All DBs
Position
Unknown
AA seq
3244 aa
AA seq
DB search
MVRETRHLWVGNLPEHVREEKIVEHFKRYGRVESVKVLRKRGSEGGVAAFVDFVDIKSAQ
KAHNAVNKMGDRDLRTDYNEPGSVPSAVRGLEDSSPSSSRDVTGFSRATVGPVFGPPVSL
HTREGRYERRIEGSSETRERAYDHSPYGHHERSGTFDRQRHYNADYYRDRTMFAAAGPGS
SAIGGSFEAADPHFDSRIRDPFTLTNSSRRDLYRDERGRRVDRTYHHRRSRSSHSSQSRH
PSPQRTTGQTPKTPHSPKRAPLSPGRGPRSRSHSRSSSSDSVSSTSSTGSGSDSNSSSSD
GSRARSVQSSATHAPTQSSMGLDSDEPRRSFGIKVQNLPVRSTDTSLKDGLFHEFKKHGK
VTSVQIHGASEDRYGLVFFRQQEDQEKALTVSKGKLFFGMLIEVIAWNGPETESENEFRP
LDGRIDEFHPKATRTLFIGNLEKTTSYQQLLDIFQRFGEIVDIDIKKVNGVPQYAFVQYS
DIASVCKAIKKMDGEYLGSNRLKLGFGKSMPTTCVWLDGLATSVTEQYLTRHFCRYGHVV
KVVFDRLKGMALILYNNTDFAQAAVRETKGWKIGGNKIKVDFASQESQMAFYRTMQTSGQ
DIRDFYEIPTERREERRPPYHEFTAERAYFENIRTPGIYPEEARRDYAARSRERFPELEH
FQGEHFDPRFHEDPRDFRDFRDPFEQDIRKYTYIQRERERERERFEADRSRWSPSHPRRP
ITPTVSPSPSDRAPRDSERRVYSQSSERSGSVSSMSPPHFDKSEKALLEHASKSDKSDKS
SQPELVASAEKIKRTKRKEKGDKDKAEKVKSRKTKGQSPSNLLPETELETGFDGASGRGR
GSDQDAHERNKCKGEAEPLPGNQLATALDSVKSDRSENSKGENSDLDGKNRLKKHLKPDI
GNDGKDVSVDSDRLEARKRRFADSGGRTIRQKRSRHEEDDAVPSSDFGGAGALMKEIDTD
KNKDSQRRDSRLKSDKSSTQKDGQEDLRGQREKSESLDPRHPGHISSRRFSHEGITDQSS
IREHEHHAAFTCVAQNADTEKSVKNKEDHVDIDLSQSYRKQMEQNRRLHQQQLQRESDKS
DKPGSPQEAEDLEHRSLVHEVGKPPEDVTDTFPSHKLKKIDLLETDSGIKRERVYRRIRQ
KSEDRDWNNISPPGHQHFSHHADEEFSDPSQKELSRNEEKLHPDLELLVKRTHSTQVNKP
NTPLLSVEEEQQKRWESRVKQDLLPDLNFSRGLGKNIHNRKRLEYGMWHDLEPGEVRSDS
EEDREAKPHSPVPSTSVPFSERPRVDRFSDPKLASLERNKFYSFALDQTITPDTKALLER
AKSLSSSREDNWSFLDYDSHFAGLRNRKDTEKVESAPRPTPSWYMKKKKIRSGSEDKLDE
RKEEPKPEEQERRELFASRFLHSPVFELDTRRLQHLERKHEEPELVNLQPGQQGDGELDT
GPVVLFHSRFLELTRLQQQKNKPHQLPEAKEVSIITSEKVEKTPVQEQQAVQSPETTESI
MEPEIKPISPAEEAIPEPRLTLTSVTQSVVKDLPPPEETFVALNPTPDPYTPVSVIKEEI
KVEIKEIEPIVPMHHQLTEGLSDAEPAPVAAPAPIYSMDKYKASQSVEKYDNISDVKPLC
IEKPSRRDSNDELVSISEAELDPQTTQPEVPEATSPIPHSLVEEEKETNAIWKTEAEPEG
EEENPQVIKLQMPIDETNDEPVSPQKEYKTKEMKNKKLKHSPAQVAPVPVVSNSGLEKPL
TRKSERIDKEKLKRGSSPRAESKSTGKSPIQGSESEMSEPGISAGRARRRNVKSVYATPV
EDDGPVRPGKEIPDSPRSARKRGSDKDATQQQNMEQDPPAPAPTKRGRPPKNRKQVDESS
ACKVEKSKLDNKDTDSNESEGGERIPRVSKGKTSPHGTKDSWNPMSTVQGSGLPRKVRKS
DATEDDQEMDFTDEDSMVLQDSSSSFKEDPPIQVEKKEEKDKQGRELGRDKDDFLDEASE
GKSNGKESDSPVLEEKSASEKIVRGKTKLTRTPKSPVLKNLKIRLNVTEVKDLLQLGDDE
LGSQEDSSKKLRPDDHSDPVSKCTSADQEGPNDEEKDISAEEKQELLESPKHVISQELEL
EQAVENIAKLTDPTFPTEPPTPPIPPPEVKSEPEEEKPYPASETELMAAIDSITAEDGSV
ISSQAPPPSADVVSEPEIQNVIPSAKDDEPATTNTPAIKEEPVFPTTPKKGPKGRPKTPK
RFKGQKQVRRDFKEGPSISEELTTPLAESPPSSVKTVLTSTPSAATTTVITPTTWKPEPE
PEPLAVKATDVNKDGEAPSEEQIQHLKSVNPQSKSPILPKPQQVPAECTTPSLSPLANRP
HIRPIQTNRIPVSPPDWRHQSKDTVSVSPFMPLSSKENQSLPSDSDNMIIDHGTSDLRQI
LMKHKNLSLPGSSSIPGNLPTLRDQNPSDSNTPSAVVPNKSPLPSSLMVAHPAPPIVRPP
ALLPSPESKSVISVIASTATSVISRVCNPPESDDKVNINIGNPCVDMTLPKPTYRPNKDD
AGSYHGPVADEVGSATRFIVESPTLGAGSCPGLRVNTSEGVVVLSHSGQKIEGPQRISAK
ISQIPQATAGDMESQQLVSMPQIKQEMYGHSHLGLQKGPSSQTDHGHPGKMQSTSIKQES
TGLEKMESSYQPGPQGVVKRLPQGNQQVMSYHQEYMPIKHQKKMDSADPHSTDGAKPSWT
SAISPAISPHLPSPPGNHVGFVTAAGDRAPSHISGVKQEPRSPRKSGHPHSPFTKVSSPI
GSSSPKGIPGMLSTGLPAMQQFISGVHHQEQSVIMQPHSVQGGLGRMSPHRVAQSIPVGH
LVQGDVRVNTPPLSVMSYGMHSEPLASPWSGSMQPRPTSPQTVGRDKVLKVNPASLRGHE
GEQEEARRFHQAQARQSAAQLKPETMQSDPRGRSVQLETYMAQRDMRVLLHQQGERLATD
PHSGHIQEILPPSSAPSNLSLSLSPRAHVLSKGVSEKDITKQLEAKRPHSPLPKDGLMGI
RQSGQAMASPQRAQLMPPGPSGSFPEYSGMYSNRGGIHSQIPETPPVGLNQPPLNVTPTM
GADLQTKPDGKMTQPVNMLQLLTKYPIVWQGLLALKNDTAAVQLHFVCGNKALAHRSLPL
QEGGALLRIVQRMRLEASQLESVARRMTGDSDFCLLLALPCGRDQDDVLNQTQALKAAFI
NYLQAKLAAGIINIPNPGSNQPAYVLQIFPPCEFSESHLSQLAPDLLNRISSISPHLMIV
ITSV
NT seq
9735 nt
NT seq
+upstream
nt +downstream
nt
atggttcgggaaaccagacacctttgggtgggaaatttacccgaacatgttcgagaggag
aagatcgtggagcattttaaacggtatggccgtgtggaaagtgttaaagttctgcggaag
cgagggtcagagggcggtgttgcagcctttgtggattttgtggatattaaaagtgcgcag
aaagctcacaatgctgtcaacaagatgggagaccgggaccttcgaactgactacaatgaa
ccggggtcagtccctagtgctgttcgaggccttgaagacagctccccctcgagcagtcga
gacgttacaggattctctagggcaacagttggtccagtgtttggcccacctgtgtccctg
cacaccagagaaggacgttatgaacggagaatagaaggtagctcagaaacccgcgaacgt
gcatatgatcacagcccatatggacaccatgagcgcagtggcactttcgacagacagcgc
cactacaacgctgattattacagagatcgtaccatgtttgctgctgctggccctggaagt
agtgccattgggggaagctttgaggcagcagacccacattttgactctagaattcgagac
ccatttactcttactaattcttcacggcgtgacctatacagagatgagagaggacggcgg
gttgataggacctaccatcaccggaggagccgatcatctcattcctcacagtcgaggcac
ccttctccacaacggaccacgggacaaacccctaaaactcctcattcccctaaaagagct
cctttgtcccctgggagaggtccgcgatctcgatcccacagcaggtcgtcgagctctgat
tctgtcagcagcaccagcagcactggcagcggcagtgactcaaacagcagctcaagtgat
ggatctcgggcacgctctgttcagtcgtcagctactcacgcccctactcagtcttctatg
gggctcgactcggatgagccacgcagaagctttgggattaaagtgcaaaacctaccagta
cgctccacagacacaagtttaaaagatggacttttccatgaattcaagaaacatgggaaa
gtgacgtcagtgcagatacatggagcgtcagaagaccgctatggtttggtgttttttcga
cagcaagaggatcaagagaaagccctcactgtctccaaaggaaagctgttctttggcatg
cttattgaagtcatagcctggaatggtcctgaaacagagagtgaaaacgagttcaggccc
ttggatggtcggatagatgagtttcacccaaaggccacaaggacactgtttataggcaac
cttgagaagactactagttatcaacaactccttgacatttttcaacgctttggagaaatt
gtggacattgacatcaagaaagtaaatggagttccccagtatgcctttgtgcaatactct
gatattgccagtgtctgcaaggccattaagaagatggatggagagtatctggggagcaac
agactaaagcttgggtttgggaagagtatgcctacaacgtgtgtctggctagatggtttg
gcaaccagcgttacagagcagtacctcacacggcatttctgccgctatggacatgttgta
aaggttgtgtttgatcgattaaaagggatggccctcatcttgtacaacaacacagatttc
gctcaggcagctgtaagggagaccaaaggttggaagattgggggcaataaaataaaggtg
gattttgcaagtcaagagagtcagatggccttctaccgaactatgcagacatctggtcaa
gacattagagacttctacgaaattcctactgaacgacgagaggaacggagacctccatac
catgaatttacagcagaaagggcttactttgagaatatacggacacctggcatctatcct
gaagaagctcgaagagactacgctgctcgcagcagggaacgttttcctgaactggaacac
tttcagggggaacactttgacccacgttttcatgaagacccaagagacttccgggacttc
agagacccctttgagcaagacattcgaaaatacacatatattcaaagagagcgagaaaga
gagcgagagcgatttgaggctgatcgtagcaggtggagcccttcccatccaaggcgacct
attactcctacagtatcaccatcaccctctgatcgagctcccagggactcagaaagacgc
gtttacagtcaatcttcagagagaagtggtagtgtgagctcaatgtcaccaccacacttt
gataaatctgaaaaggccctgcttgaacatgcctccaagagtgacaagagtgacaaaagc
agccaaccagagcttgtggcaagtgcagagaaaattaaacgtacaaaacgaaaagagaaa
ggggacaaagacaaagctgagaaggttaaatccaggaaaacaaaggggcaatccccatcc
aacctactaccggaaacagagcttgagactggttttgatggagcgtctggaagaggaagg
ggatcagaccaggatgctcatgagaggaataaatgcaagggggaagctgaacccttacct
ggcaatcagttggcaactgctcttgactctgtaaaaagtgacagatctgaaaatagtaaa
ggtgagaactcagacttggatggaaaaaatcgactcaagaaacatctaaagcctgatatt
ggaaatgatgggaaagatgtatccgttgactcggatcgccttgaggcaagaaaaaggcgc
tttgctgattcaggtggcaggaccattcgtcagaaaagaagcaggcatgaagaggacgac
gccgttccatcttcagattttggtggtgctggtgctcttatgaaagagattgacactgac
aaaaacaaagattcacaacggagagattcaagactcaaaagtgataaaagtagcactcag
aaagatggtcaagaggaccttagaggacaaagggagaagtctgagtctctggacccacga
catccagggcacatttcatctagaaggttttcacacgaggggattacagatcaaagcagt
ataagagaacacgaacaccatgctgctttcacatgtgttgctcagaatgctgacactgag
aaaagtgttaagaacaaggaagaccatgttgacattgacctctctcagagttatcgcaag
caaatggagcaaaacaggcgactgcaccagcagcaactgcagcgtgaatctgacaagtct
gacaaaccaggaagtcctcaagaagcagaggacttggaacatcgcagtcttgtgcatgaa
gttggcaaaccacctgaggatgtaacggatacttttccatctcacaaattaaagaaaata
gaccttttagagactgactccggaattaagagggagcgtgtctacaggagaattagacaa
aaaagtgaagatcgtgactggaacaacatctctcctccaggacatcagcacttctctcac
catgcagatgaagagttttcggacccttctcagaaagagttgagtagaaatgaggaaaaa
cttcacccagatctggagctgttggtcaaaaggacacatagcacacaggtaaacaagcca
aacactcctttacttagtgtggaagaagagcaacagaagagatgggagagcagagttaaa
caagacttgttacctgacctaaacttttctagaggtcttggtaaaaatattcacaatcgc
aagcgtttggaatatggtatgtggcatgaccttgagcctggggaagttcgatctgactct
gaagaggacagagaagccaaaccccactctccagtgccctccacatcagtgcctttttct
gaaaggccaagggttgatcgattttcagaccccaagctagcaagtcttgaaaggaacaaa
ttctactcctttgcacttgatcaaaccatcacaccagatacaaaggctctgctcgaacgt
gcaaaatctctctcctcttcaagagaagataactggtcctttttggattatgattctcac
tttgcaggtttgcgcaacagaaaggatactgagaaggtggaatcagcaccacgtcctaca
ccctcctggtacatgaaaaagaaaaagattcgcagtggatctgaagacaaacttgatgag
cgcaaggaggagcccaagccggaagaacaggaacgtagggagctttttgcctcccgcttt
cttcacagccccgtgtttgagctggacactcggcgacttcaacacttggaacgcaaacat
gaagaacctgagcttgtaaacctgcaacctggacagcaaggtgatggtgaacttgacact
gggccagttgtccttttccatagtcgttttttggaacttacacgacttcaacaacagaag
aataaaccccatcagttaccagaggcaaaagaagtctcaataatcactagtgagaaagtg
gaaaaaacacctgttcaagagcaacaagcagtgcagtctcctgaaacaacagaatccatc
atggagccagaaatcaaaccaatcagtcctgctgaagaggctattcctgaaccccgactc
acacttacttctgtcacccaatctgtggtcaaggaccttcctccaccggaagagacattt
gttgcattaaatccaacccccgatccatatacccccgtgtctgtcataaaggaagagatt
aaagtagagatcaaagagattgaacctattgtacctatgcaccatcaattaactgagggc
ttatctgatgctgaacctgcaccagttgcagcacctgcacccatttattcgatggataaa
tataaagcttctcaatctgtagagaaatatgataatatcagtgatgtaaaacctctctgt
atagaaaaaccaagccgtcgggattctaatgatgagcttgttagcatttcagaagcagag
ctagatcctcagacaacacaaccagaagtgccagaagcaactagtcccattccacatagt
cttgtagaggaagagaaggagaccaatgctatttggaaaacagaagcagagcctgaggga
gaggaggaaaatcctcaagttattaaactgcagatgcccattgatgagacaaacgacgag
cccgtttcacctcagaaggagtataaaacgaaagaaatgaaaaataaaaagctcaaacac
tcccctgctcaagtggctccagttcctgtggtatctaactctggtctggagaaaccatta
acacgcaagagtgagcgcattgacaaagagaagctaaaacgaggatcatccccaagggct
gaatcaaagtcaacaggcaagtctccgattcagggatcagaatccgagatgtccgagcct
ggcatatcagcaggcagagcaagacgaagaaatgttaaatctgtgtatgccactccagtt
gaagatgatgggccagttcgtcctggaaaggaaattccagactcgccacgctctgccaga
aagcgaggttcagacaaagatgcaacacaacaacaaaatatggaacaggatccacctgct
ccagcccctacgaaacggggccgtccgcccaagaatcgcaagcaagtggacgagagttca
gcatgtaaagtagaaaaatctaaattggacaataaagacacggactcaaatgaatcagaa
ggtggggaacgaataccaagagtgtcaaaaggtaaaacctctcctcatggcaccaaggat
tcatggaatccaatgtcgacagttcaaggatctggattaccacggaaagtgaggaaaagt
gacgcgactgaggatgatcaggaaatggatttcacagatgaagattccatggttttgcaa
gattcatcaagttcatttaaagaagatccacccattcaagttgaaaagaaagaggagaaa
gacaaacaagggagagaattaggcagagataaagatgattttctcgatgaggcttctgaa
ggtaaatcaaatgggaaagagtccgattccccagttttagaagagaaatctgcttcagag
aagattgttagaggaaaaaccaagttgacgagaactcccaagtctcctgttctcaagaac
ctcaaaatcagactaaatgtcacggaggtcaaggatcttcttcagttaggggatgatgaa
cttgggagtcaagaggattcttccaaaaagctcagaccagatgaccacagtgatcctgtt
tcaaaatgtactagtgccgaccaagagggccctaacgatgaggaaaaggacatttccgct
gaggaaaaacaagagctccttgaatcaccaaaacatgtcatttcacaggagctggaattg
gagcaagctgttgagaacattgctaaacttacagatccaacttttccaacagaaccacca
acgccacctattccacctccagaagtcaaaagtgagccagaggaagaaaaaccttatcct
gctagtgagacagaacttatggctgctattgattcgataactgcagaggatggaagtgtt
atctcatcccaagcgcctcctccaagtgctgatgtcgtttcagaacctgagatacaaaac
gtgataccctctgccaaggacgatgaacctgcaacaacaaatacacctgccataaaggag
gagcctgtctttcctacaacaccgaaaaagggcccgaagggaagacctaaaacacctaaa
cgttttaaaggacaaaagcaagtaagaagagattttaaggaaggcccttcaataagtgag
gagttgacaactcctttagcagaaagcccaccatccagtgtaaagactgttcttacatca
actccatcagcagcgaccacaacggttatcactcctactacttggaagccagaacctgag
ccagagcctttggcagtcaaagccacagatgtaaacaaagatggagaggcaccttctgaa
gaacagattcaacatctcaaatctgttaacccccaatcgaagagtccaatacttccaaag
ccccaacaggtgccagccgagtgcaccaccccttccctgtctccactagctaacaggcca
catatacgacccattcaaacaaatagaattcctgtttctccaccagattggcgccaccag
tctaaagatacagtctccgtctcacccttcatgccgttatcatcaaaggaaaaccagtct
ttaccctcagactctgacaacatgattattgatcatggcacaagtgatttgagacagatt
cttatgaaacacaaaaatctttcattgccaggcagtagttctattcctggtaatctaccc
accctacgagaccagaatccttctgatagtaatactccatcagctgttgtgccaaataag
tcaccactacctagcagtttaatggtagctcatccagcgccccctatagttcgacctcca
gccttactaccatctcctgagtcgaagtctgtgatctctgttattgcatccactgcaacc
tctgttatcagtcgcgtctgcaaccctcctgagtccgatgacaaagttaacataaacatt
ggaaatccctgtgtggatatgactttacccaagccaacttataggcctaacaaagacgat
gctggatcataccacgggcctgtggcggatgaggtgggaagtgccacacgattcattgtc
gagagccccactcttggtgcaggatcttgcccaggtctaagagttaatacatctgaagga
gtggtagttttgagccactcgggccagaaaatagagggaccacagaggataagtgcaaaa
ataagtcagatcccacaagcaacagcaggtgacatggaatctcagcagttggtatccatg
ccccagataaaacaagaaatgtatggtcattctcatctaggacttcaaaaggggccttca
tcgcagacagatcatgggcatcctggtaaaatgcagtcgacttctattaaacaagaaagc
acgggtttggaaaagatggaatcttcttaccaacccggacctcaaggagtagtgaagcgt
ctcccacaaggtaaccaacaagtaatgagttaccatcaagaatacatgccaataaaacat
cagaagaaaatggacagtgctgatcctcacagtacggatggagccaaaccatcttggacc
tctgctataagtcctgcaataagcccccatttgccctctccgcctggtaaccatgttggc
tttgttactgcggctggtgacagagctccctctcatatcagtggagtcaaacaagaacca
cgatcccctcgaaagtcaggtcatccccactctccgtttactaaagtgtcctcacccatt
ggctcctcctcacccaagggcataccagggatgttatccactggccttcctgccatgcaa
cagtttatctctggtgtacatcatcaagagcagtcggttatcatgcaacctcacagtgtg
caaggaggcttgggacggatgtctcctcaccgtgttgcccagtcaattccagtggggcat
cttgtccaaggagatgttcgggttaatactccacctctctctgtgatgagctatgggatg
catagtgagcctcttgcctctccttggtctggatccatgcagccacggccaacgtcacca
cagactgttggcagagacaaggttctcaaggtaaatccagcttcgttgaggggtcatgag
ggggaacaagaagaagccaggcgcttccaccaggctcaagcaagacagtctgctgcacaa
ttaaaaccagagactatgcagtcagatcctcgtgggcgtagtgtccagttagaaacatac
atggcacaacgagatatgcgagtgctcttgcaccaacagggagagcgcttggccacagat
cctcattctggacacattcaagagattcttcccccctcctcggcgccctccaacctgtcc
ttatccttgtctccaagagcacatgttttgtctaaaggtgtgtccgagaaggatataaca
aagcaattagaggcaaagaggccacactctcctcttcctaaagatggattgatggggatc
agacaatctgggcaagcaatggcatctccccagagagctcagctaatgccaccaggacct
agtggctcattccccgagtactcggggatgtactcaaaccgaggaggcatccactctcaa
ataccagagacgccacctgttggacttaaccagccacctctgaatgtcacaccaaccatg
ggtgcagacctccagacgaaaccagatggcaagatgacgcagcctgttaatatgttgcag
ttgctcacgaaataccctattgtttggcaaggcctgctggcactgaaaaacgacacagct
gcagtccagttgcattttgtctgtggcaacaaagctttggctcatcgatcactgccccta
caagaaggaggcgcattgcttaggattgtccagagaatgagactagaggcttcacaattg
gagagtgtagcccgaagaatgacgggggacagcgacttctgtctcctccttgcactgcca
tgcgggcgagaccaagacgacgtcctgaaccaaactcaagctcttaaggctgctttcatc
aactacctgcaggcaaagttggctgctggtatcatcaatatccctaacccaggctccaat
cagcctgcctacgtgctgcagattttcccaccatgtgaattctccgagagccacctgtcg
cagctcgcccccgaccttctcaacaggatctccagcatctcaccacacctcatgattgtc
atcacctctgtgtaa
DBGET
integrated database retrieval system
