Trematomus bernacchii (emerald rockcod): 117495717
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Entry
117495717 CDS
T09643
Symbol
ptprfa
Name
(RefSeq) protein tyrosine phosphatase receptor type Fa isoform X1
KO
K05695
receptor-type tyrosine-protein phosphatase F [EC:
3.1.3.48
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04514
Cell adhesion molecules
tben04520
Adherens junction
tben04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
117495717 (ptprfa)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
117495717 (ptprfa)
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
117495717 (ptprfa)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tben01009
]
117495717 (ptprfa)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117495717 (ptprfa)
Enzymes [BR:
tben01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
117495717 (ptprfa)
Protein phosphatases and associated proteins [BR:
tben01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
117495717 (ptprfa)
Cell adhesion molecules [BR:
tben04515
]
Immunoglobulin superfamily
Type II RPTP family
117495717 (ptprfa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_2
fn3_2
ig
Tc-R-P
PTP-SAK
Fn3_VIN3
DSPc
V-set
Y_phosphatase3
PTPlike_phytase
PTP-NADK
C2-set_2
Ig_C17orf99
Fn3_PTPRU
Fn3_ELFN
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
117495717
NCBI-ProteinID:
XP_034003070
LinkDB
All DBs
Position
Unknown
AA seq
1921 aa
AA seq
DB search
MDLRFRRLLPLTRAALHLLLLATLVLPTHTESMPGFIKSPDDQTGISGGVASFVCQAVGE
PKPRITWMKKGKKVSSQRFEVIEFDDGSGSVLRIQPLRTHRDEAIYECTATNSVGEINTS
AKLTVLEEDQIPHGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEIFWFKDFLPVDISS
TNGRIKQLRSGGTPIRGALQIENSEESDQGKYECVAVNSAGTRYSAPANLYVRDQREVRR
VPPRFSIPPTNHEVMPGGSVNLTCVAVGAPMPFVKWVSGEVELTREEEMPIGRNVLELTN
IRQSANYTCVAISSLGMIETTAQIIVKALPRPPTSLIVTETTATSVTLTWDSGNPEPVSY
YVIQYRAKVSDNGFQEVDGVATTRYSIGGLSPFSEYEFRVMAVNNVGRGPPSGIVDTRTS
EQAPSSPPLHIQARMLSSSTMLVQWETPEEPNGQIRGYRVYYSSEHDAPLSAWQKHNTDD
SMLTTISGLTADITYSLRVLGFTSVGDGPPSEVLQIKTQQGVPSQPSGFEAEAELDSRIM
LSWLWPVQEPIISFELLYWEESNPRDKRHATFGPAGSYAVDGLKPDTLYMFSLAAKSVMG
LGVFTQPIEAQTAQSTPSAPPQEVRLLSLSSTSIKVSWVAPPTDRHHGEIVRYSLSYQAL
TGEDLSLHQVSWIGADVTSYLLEDLLKWTEYLVWLRAHTDAGPGPESSAARIRTMEDVPG
APPRKVEADALNSTAIRVTWKPPLSVKQHGQIRGYQLVYSRLVNGEPHGQPLIMDISLPD
AQEAIVTGLLAETTYSVTVAAYTTKGDGARSKAKVVTTTGAVPGKPTMMISTTIGNTALI
QWQPPKEMVGEHVGYQLQYKRAEEEAFTIKDFKKADDHFTVTGLHKGATYIFKLCAKNRA
GNGEEYVKEISTPEDIPSSYPQNLSVVGLTATSTKLSWEPPPLAERNGKIVRYVVVYRDI
NILNNNTNSTIETDMTVQGLQPDTTYDIRVQAFNSKGGGPISPSIQSRTMSLSMPVFTKN
FGVKAVTKTSVLLTWEVPETFKSQVPLKILYNQQSVEVQGDLKRKLITQLQPDTDYSFVL
MSRGNSAGGLQQQVSIRTAPDLPQIKPALYQEDVEEGGRVTISLSTGPAEVSVRWYYIVV
VPVNPASHRRWENPEDMDIQELLEPGADSSLQRKKRQSQNLLQPYIAAKLDTLPELFTLG
DEKKYNGYYNKPLPGQQQYRCFVLADLTDNESQRTFAASPFSEPFMVKLHSGMSRHAEEP
EMLWVMGPVLAVILIIIIVIAILLFKSKQERKRTCPAKDEHMAGVKDSLLAHSSDPVEMR
RLNYQTQGSSALSCPKTPRMREHPSIPISDLADYIERLKANDGLRFSQEYESIDPGQQFT
WEHSNLEVNKPKNRYANVIAYDHSRVILTPVDGVSGSDYINANYIDGYRKQNAYIATQGP
LPETLSDFWRMVWEQRTCTIIMMTRLEEKSRVKCDQYWPSRGTETYGMIQVTMLDTVELA
TYSVRTFTLYKNGSSEKREVRQFQFMAWPDHGVPEYPTPTLSFLRRVKACNPPDAGPMVV
HCSAGVGRTGCFIVIEAMLERMKHEKSVDIYGHVTCMRSQRNYMVQTEDQYIFIHEALLE
AATCGNTEVPARNLYAHIQKLTQVSAGESVTAMELEFKKLANSKAHTSRFISANLPCNKF
KNRLVNIMPFESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYMATQGPLSETTEDFWRM
LWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTD
ARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRT
GVFITLSIILERMRYEGAVDLFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHYA
T
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atggatctcagattccggcggctgttgcctctcaccagagcagctcttcatctcctgctg
ctggccacactggtgctgcctacacacactgagagcatgcccggcttcataaagtcccct
gatgaccagacggggatttcgggaggagtggcgtcgttcgtatgccaggccgtgggtgag
cccaaaccccgcatcacctggatgaagaaggggaagaaagtcagctctcagcgctttgag
gtgattgagtttgatgacggctcgggctccgtgctgcgtatccagcctctgaggacccac
cgcgatgaagccatctatgaatgcaccgccaccaacagcgtgggagagatcaacaccagt
gccaagctcactgtcttagaagaagaccagatccctcatgggttccccaccatagacatg
ggcccccagctgaaggtggtagagagaacacgtactgctacgatgctgtgtgcagccagc
gggaaccctgaccccgagatcttctggttcaaagacttcctccccgtggacatcagcagc
accaacgggcgcatcaaacagctgcgttcaggtggtacaccaatcagaggagctctccag
attgagaacagcgaggagtcggaccagggaaagtacgagtgcgtggccgtcaacagcgcc
gggactcgctactctgctccagctaacctttacgtccgagatcaacgtgaagttcgtcgt
gtacctccccgtttctccatcccccccaccaatcacgaggtgatgcccggcggcagcgtc
aacctcacctgcgttgcggtcggtgcccccatgccttttgtcaagtgggtgagtggcgag
gtggagctgacccgggaggaggagatgccgattggccgaaacgtgctggagctcaccaac
atccgccagtctgcaaactacacctgtgtggccatctcctccctgggcatgatcgagacc
accgcccagatcattgtcaaagctctgcccaggccacccacctccctcattgtgacagaa
accacggccaccagtgtcaccctcacctgggactctggcaacccagaaccagtatcctac
tatgtgatccagtaccgtgccaaagtgtccgacaacggcttccaggaagtagacggggta
gccacgactcgatacagcattggcggcctcagcccattctcggaatatgagtttcgtgtc
atggccgtcaacaacgtcgggcgggggcctcccagtggaattgtagacacccgtacaagc
gagcaggccccttcatcccctcctcttcacatccaggcacgcatgctgagctccagcacc
atgctggtccaatgggaaactccagaagagcccaacggacaaatccgaggctaccgggtt
tactacagctcggagcacgacgcccccctcagcgcctggcagaaacacaacacagacgac
agcatgctcaccaccatctcaggcctcaccgctgatatcacctacagcctgagggtgctg
ggcttcacctctgtgggagacgggcctccctctgaagttctgcagatcaagacccagcag
ggagtcccctctcagccgtctggttttgaggctgaagccgagctggactctcgcatcatg
ctgtcctggctgtggccggtccaggagccaatcatcagctttgaactgctgtactgggag
gagagcaaccctcgggacaagcgtcatgccacctttggcccagccggctcctatgcagtg
gacggtctgaagccagacacactctacatgttctccctggcagcaaagtctgtgatgggt
ttaggagtgtttactcagcccattgaggcccagaccgcccaatccaccccctcagcccct
ccccaggaggtacgcttgctcagcctcagctccaccagcatcaaggtgagttgggtggct
ccgcccacagacagacaccacggggagatagtgaggtactccctgagctaccaggctctg
acaggggaggacctgagcctccaccaggtgtcatggatcggtgctgatgtcaccagctac
ctgctggaggacctgctgaagtggactgagtatttggtgtggctgagggctcacactgac
gctgggccgggcccggagagctccgctgcccgcatcagaaccatggaagatgtgcctgga
gctccccccaggaaggtggaggcagatgccctcaactcaaccgccatcagagtgacctgg
aagccccccctgtctgtgaagcagcacggccagatcagaggctaccagctggtctactcc
aggctggtgaacggggagcctcacggacagccgctcatcatggacatctcgcttcctgat
gcccaggaggccattgtaacaggtctgctcgcagagacaacctactctgtgaccgtggct
gcttacaccaccaagggcgatggagcgcgcagcaaggccaaggtggtcactaccacggga
gcagtgcctggcaagcccactatgatgatcagcaccaccatagggaacactgcccttatc
cagtggcagcctccaaaggagatggtgggggagcatgtggggtaccagcttcaatacaag
agagcagaggaggaggctttcaccatcaaagacttcaaaaaggcggatgatcacttcaca
gtcaccggtctccacaagggagccacctacatcttcaaactgtgcgccaaaaaccgggca
ggcaacggggaggagtatgtgaaggagatcagcacccccgaggacattcccagcagctac
ccccagaacctgagtgtggtgggcctgaccgccacctccaccaagctgtcctgggagccc
cctcctctggccgagaggaacgggaagattgtcagatatgtggtggtttatcgagatatc
aatatcctcaataacaacaccaacagtaccatagaaacagacatgaccgtccaagggttg
cagccagacaccacctacgatatcagagtccaagctttcaacagcaagggggggggaccc
atcagccccagcattcagagtcgaaccatgtccttgtccatgccagtgttcacaaagaac
tttggcgtgaaggctgtgacgaaaacctctgtccttctgacctgggaagtgccagaaacc
ttcaaatctcaagtgcctctcaagatcctgtacaaccagcagagtgtggaggtccagggc
gacctgaagaggaagctgatcactcagctgcagccagacacagattactccttcgtgctc
atgagccgggggaacagtgctggggggctccagcagcaggtgtccatcagaaccgcccca
gacctgccgcagatcaaaccagcactataccaagaggatgtggaggagggggggagagtg
accatcagcctgtccactgggcctgctgaagtctctgtcaggtggtactacatagttgtt
gtccctgtcaatccggcttctcataggagatgggaaaaccctgaagacatggacatacag
gagctcctggagcccggtgctgacagcagcctgcagaggaagaagagacagagccagaac
ctgcttcagccatacattgctgccaagctggacacgctgcctgagctcttcacactgggc
gacgagaagaaatacaacggctactacaacaaacccctcccgggccagcagcagtatcgc
tgcttcgttctggctgacctgacggacaacgagtctcagaggacctttgcagccagcccg
ttctcggagcccttcatggtgaagctccacagcgggatgagccggcacgccgaggagccg
gagatgctgtgggtgatggggccggtgctggcagtcatcctcatcatcatcatagtcatt
gccattctactcttcaagagcaaacaagaaaggaaacgaacatgtccagccaaggatgag
cacatggcaggcgtcaaggactctctgctggcccactcctcagaccctgtggagatgagg
agactcaactatcagacacaaggttcaagtgccctcagttgcccgaaaactccaaggatg
agggaacatccttccattcctatctctgacctggcagactacatcgagagactcaaggcc
aatgacggtctgcgcttctctcaggagtacgagtctattgatccaggacagcagttcacc
tgggagcactccaacctggaggtcaacaagccaaagaaccgctatgcaaatgtgattgcc
tatgaccactccagggtcatcctcacacctgtggatggagtttcaggcagcgactacatc
aacgccaactacatcgatggctacaggaagcagaatgcttacattgccacacaggggcca
ctgccggagacactgagtgacttctggaggatggtgtgggagcagaggacctgcaccatc
attatgatgacccgtctagaggagaagtctcgggtcaaatgtgaccagtactggcccagt
cgaggcacagagacatatgggatgatccaggtgaccatgctggacactgtggagctggct
acgtacagtgtacgcacattcaccctctataagaacggctcgagtgagaagagagaggtt
cgacagttccagttcatggcctggccggaccatggagtgcctgagtatcccacccccaca
ctgtccttcctacgcagagtcaaggcctgtaaccctccagatgctgggcccatggtggtc
cactgcagtgccggtgttggccgtactggctgcttcattgtgattgaagccatgctggag
aggatgaaacacgagaagtcggtggacatttacggtcatgtgacgtgtatgcggtctcag
aggaactacatggtgcagacggaggatcagtacatattcatccatgaagccctgctggaa
gctgcaacatgtggcaacacagaagtccccgctagaaacctgtacgcacacatccagaag
ctcacccaggtctctgcgggagagtctgtcaccgccatggagctggagtttaagaaactg
gccaactctaaagcacatacctcaagattcatcagtgccaacctgccatgcaacaaattc
aagaaccgcctagtgaacatcatgcctttcgagtccacccgtgtctgcctgcagccaatc
agaggggtggagggctcagactacatcaatgccagcttcatcgacggatacaggcagcag
aaagcctacatggccacacagggcccgctgtctgagaccacagaggacttctggagaatg
ctgtgggaacacaactccaccatcgtcgtcatgctcaccaaactccgcgagatgggacgg
gaaaagtgccatcagtactggcctgctgagcgctcggcacgctaccagtactttgttgtg
gaccccatggctgagtacaacatgcctcagtacatcctgagagagttcaaagtcacagac
gccagggacggtcagtccaggactatcaggcagttccagttcactgactggccagagcaa
ggagtgccaaaaactggggagggctttatcgacttcatcggccaagtccataaaacaaaa
gagcaatttggacaagatggaccaattactgtgcactgcagtgctggtgttgggcgaact
ggtgtgttcatcactctgagcatcatcctggagaggatgaggtacgaaggagcggtcgac
ctcttccagaccgtcaagacgctccgaacacagaggccggccatggtgcagacagaggac
cagtaccaactgtgctaccgcgctgctctggagtacctgggaagctttgatcactatgca
acataa
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integrated database retrieval system
