Trematomus bernacchii (emerald rockcod): 117497310
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Entry
117497310 CDS
T09643
Symbol
tdg.1
Name
(RefSeq) thymine DNA glycosylase, tandem duplicate 1 isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
117497310 (tdg.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tben03400
]
117497310 (tdg.1)
Enzymes [BR:
tben01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
117497310 (tdg.1)
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
117497310 (tdg.1)
BRITE hierarchy
Motif
Pfam:
UDG
Ribosomal_L19e
Motif
Other DBs
NCBI-GeneID:
117497310
NCBI-ProteinID:
XP_034005154
EnsemblRapid:
ENSTBNG00005017971
LinkDB
All DBs
Position
Unknown
AA seq
460 aa
AA seq
DB search
MEDKLNGFPVVSPEYLQQWVQSAQQFQALQAHQAQYSGYDHNQQSHYPEGPNGEAAMAHM
AYPEPMMEEQEPESIAKPPPKKRGRAAQPKEPKAPKPPKVPKAPKEPKPPKPPKDPKAPK
AKPGPKPKKGAEVSADGKQEKIDESFKKVKRKHDRFKGMSEEEVMTKTLPDLLDYNLDYV
IIGINPGLMAAYIGRWFPGGGNHFWKCLFLSGFTKELLNHTSDTILPVKYKMGFTNMVAR
ATPGSKDLSTKEFREGGQILVEKLIKYKPLIAVFNGKCIYEMFCREMFGKKPKKLDFGLQ
PHKIPDCEVALYLMPSSSARCAQFPRAQDKVHFYIKLRELRDELKGLQKSKEIEEIDYRF
DLKLAKEDAKKAAIKEEQYDPGYEDAYGGAYGEQGPDGEPVPPPTNGHCTFSTAENTEGA
QEATTSQIPEGQLPDGQWMTQSFADQIPDISGGPKDAAVQ
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaagctgaatggattccctgttgtgtccccggagtatcttcagcagtgggtt
cagtctgcacagcagtttcaggctctccaggcacaccaggcacaatattcaggctacgac
cacaaccagcagtcccattaccccgaggggccgaacggagaggcagccatggctcacatg
gcgtatccagaacccatgatggaggagcaggagccggaaagcatcgcaaaacccccaccc
aaaaaaagaggcagagcagctcaacctaaggaacccaaggcccccaaaccccccaaagtc
cccaaggcaccgaaggaaccaaagccaccgaagcctcctaaagatccaaaggcaccgaaa
gccaaaccgggcccgaagcccaagaagggagccgaggtttcagcagacggaaagcaagag
aagatcgacgagagcttcaagaaggtgaagaggaaacacgaccgcttcaagggaatgtcc
gaggaggaagtcatgacgaaaactctccccgacctgctggattacaacctggactacgtc
attatcggtattaatccaggactgatggcagcttacattggacggtggttcccgggtggt
ggaaatcatttctggaagtgcctgtttctgtctggattcactaaggagcttctgaaccac
acgtccgacaccatcctgcctgtcaaatacaaaatgggcttcaccaacatggttgccagg
gcgacgccaggcagcaaagacctctcaactaaagagtttcgtgaaggaggccaaattctc
gtagagaagctgattaaatacaagcctcttattgctgtttttaatggaaaatgcatctat
gaaatgttctgcagggagatgtttggtaaaaaaccaaagaaactagattttggtctgcag
ccgcacaagatccccgactgtgaagtggctctgtatctgatgccttcgtccagcgctcgc
tgtgctcagttccctcgcgctcaggacaaagttcacttctacatcaaactgagggagctc
agagacgagctgaagggtctccaaaagagcaaagagatcgaggagattgattacagattc
gacctgaaattggccaaggaggacgccaagaaggcggcgattaaggaggagcagtacgac
ccgggttatgaggatgcgtacggaggagcgtacggagagcaaggacctgacggagaaccg
gtcccacccccgaccaacggtcactgcacattctccactgcagaaaacacagaaggagcg
caggaggcgaccacgtcacagatcccagagggccagctgcctgacggacagtggatgact
cagtccttcgcagatcagatcccagacatcagcgggggaccaaaggacgccgccgtacaa
tga
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