Trematomus bernacchii (emerald rockcod): 117498111
Help
Entry
117498111 CDS
T09643
Name
(RefSeq) dermatan-sulfate epimerase-like protein
KO
K01794
chondroitin-glucuronate 5-epimerase [EC:
5.1.3.19
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben00532
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
tben01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
117498111
Enzymes [BR:
tben01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.19 chondroitin-glucuronate 5-epimerase
117498111
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sulfotransfer_3
Sulfotransfer_1
DUF4962
Motif
Other DBs
NCBI-GeneID:
117498111
NCBI-ProteinID:
XP_034006083
LinkDB
All DBs
Position
Unknown
AA seq
1218 aa
AA seq
DB search
MYSNMPGNMAVNWVVYSVFLLPLFTVGTAFSGVFNATDRDIFTDHLLQVKLTEARATEQW
KLKSSDSHPNLYFNQVDVLHLRQRSSTTHSQIFKVIRAAALTMLSNVPYYMPPAKHAEFT
SKWNEIYGNNLPPLALYCLLCPEDSAALQFLIKFMDRMAEYPDWKVTSAPNDEVPTAHSL
TGFATAYDFVYSYLDERRRDVYLKKIRSETEELLEVSKHRGWGKQYLQNHQTTNILAVLI
GAIVVGSHDYPESMIWKQVAVNYMEKTMFLLNHVVDGSLDEGVAYGSYTAKSITQYVFLA
QKHFDIDNMQNNWLREHFWFYYATLLPGFQRTVGIADSNYNWFYGPESQLVFLDSFVMKN
GTGNWLAQQIRKHRPKDGPMGQSSAQRWATLHTEYIWYNSHLTPQPPHDFGKAKMHIFSN
WGVVTYGAGLPNGQGNTFVSFKSSKLGGRAVYDIVHDKPYSWVEGWNSFNPGHEHPDQNS
FTFAPNGQVFVSEALYGPKYSYLNNVLVFSPSPTSQCNSPWEGQLGECAKWLRWTDEGVG
DARGEVIVASSHRDTMFVSGEAALAYSPAMRLKSVYRALVLLNSQTLLVLDHVEKWSDSP
VKSLSAFFHNLDIDFKYVPFKFMDRYNGAMMDVWDAHYKMFWFDSQGHSPETRIQEAEQA
AEFKKRWTQYVNVTFPMTGTVSRVAYVLHGPYVKVSSCKFVDNSNNGVRLSLTLNNTETI
VSIATNYKDIGARKTYLGFGGHCKVEDINQITRYGLGTQLIPKQISTDNQLFDFGFTVNV
IAGVVLCVAIGFLTIQRKFYVCFSRLMRYALLSVLILWIAELLFVSNSCDQLLCGVKWKG
AGAKSEVNKQIALYELHRLPLPTVVITTLPGSGSEILKHLFYNSSDFVYIRVPTEHLDIP
ETEFEFDSLVDACEWSRSDATHGRFKIIQGWLHSLVHNTKLHLQNIQLVEGNRVKQPQRG
GPSMDRKKRFRRREPASELKGKLRASLDRDAEYVREMRRHVAEYPNARVVLNMRSGSWAL
KLPFIQEVVGPSLRTIYLVRDPRAWIYLMVYNSKPSLYSLKNIPQHLSLIFKEDAVSDRC
PSSAPEFKIIQRLLSRSETNPILILAHLWLAHTAALLRVSESLPEESFLQVRFEDVVNFP
QETAESIHTFLGVPVSPAALNQLIFTTSTNLYNLIYEGDISPANINMWRQNMPRKDMRLI
EDVCGTVMRRLGYTRFAN
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgtattcaaacatgcctggcaacatggcagtgaactgggttgtatactccgttttttta
cttccactgttcacagtggggacagctttctcgggggtcttcaatgccacagacagagac
atttttacagatcacttgctgcaggtcaagctcacagaagccagagcgactgagcagtgg
aaactcaagtcgtctgattcccatcccaacctatattttaaccaagtggatgtgttgcac
ttgaggcaaaggtcctccaccacccacagtcaaatatttaaagtcatccgagcggctgcg
ctcacaatgttgtctaatgtcccctattacatgccccctgcgaaacatgcggagtttaca
agcaagtggaatgagatttatgggaacaacctgcctcccctggctctctactgcctgctg
tgcccggaggactctgctgccctgcagtttcttatcaagtttatggacaggatggctgaa
tacccggactggaaggtaaccagtgcccccaacgatgaggtccccactgcgcactctctc
actgggtttgctactgcttatgactttgtttactcttacctggatgagcggcggagggat
gtttaccttaagaaaattcgatcagagacagaggaactgcttgaggtgtcaaagcacagg
gggtgggggaaacagtacctccaaaatcatcaaaccacaaacatattggctgtcctgatt
ggtgcaatagtggttggatcacatgactacccagagtcaatgatctggaaacaagttgca
gtgaactacatggagaaaactatgtttctccttaaccatgttgttgatgggtctctggat
gagggagtagcctatgggagctacacagccaagtccatcacacagtatgtcttcttagct
cagaaacatttcgacattgacaacatgcagaacaactggctgcgggaacacttttggttt
tattacgccactctcctgccggggtttcagagaacagttggcatcgcagactccaactac
aactggttttatgggccggagagccagcttgttttcctcgactcatttgtcatgaagaac
gggacgggtaactggctggctcagcagattagaaagcaccgacccaaggatggtcccatg
gggcagtcgtctgcccagcgctgggctacacttcacacagaatacatctggtacaactcc
cacctcactccacagcctccacatgactttggaaaagctaagatgcatattttctcaaac
tggggcgtggttacctacggagcagggctaccaaatggccagggtaacacttttgtctcc
tttaagtctagcaagctgggtggccgtgcagtctatgacattgtccatgacaagccttac
tcttgggtagagggctggaacagctttaacccaggtcacgagcaccctgatcagaactct
ttcacttttgctcctaatggacaagtatttgtttcggaagcactttatggtccaaagtac
agctaccttaacaatgttttggtgttcagtccatctcctaccagccaatgtaacagtccg
tgggagggtcagttgggggagtgcgccaagtggctgcgctggactgatgagggggtgggt
gatgccagaggagaggtgattgtcgcgtcctcacacagagacaccatgtttgtaagtggg
gaagcggcgttggcttattcccctgctatgagactgaagagtgtgtacagagctttagtt
ttgctaaactctcagactctgctggtgcttgatcacgtagaaaagtggagtgattcacct
gtaaagtccctcagtgcttttttccacaatcttgacattgactttaaatacgttcctttc
aaattcatggacagatataatggcgccatgatggatgtgtgggacgctcattataaaatg
ttctggttcgacagccagggtcacagccctgaaaccaggatacaagaggcagagcaggca
gctgagtttaaaaaaaggtggactcagtatgtcaatgtcacttttccaatgacaggcact
gtcagcagagtagcttacgtgttacacgggccatatgtcaaagtgtctagctgtaaattt
gtggataatagcaacaatggcgtgagactttctttaaccttaaataacacagagacgata
gtgtccattgctacaaactacaaagacataggggctaggaagacttatctaggatttgga
ggtcactgtaaagttgaggatataaatcaaatcactcgatatggccttgggactcaactt
atacctaaacaaatcagcactgataatcagctatttgactttgggttcacagtcaatgta
atagcaggggttgttctctgtgtggccataggatttttgactatacagagaaagttttat
gtctgcttcagcaggctgatgcgttacgccctcctctctgtgctcattctgtggatagcc
gagctgctgtttgtgtctaacagctgcgatcagcttctctgtggggttaaatggaaaggt
gcgggcgccaaaagtgaagtaaacaaacaaatcgcactgtacgagctgcaccggctcccc
ctacccaccgttgtcataacaacccttcccggatcggggtcagaaatactcaagcacctt
ttctacaacagctcagactttgtttacataagagttcccaccgagcacctggatattcct
gagacagagtttgagtttgactctttagtcgacgcctgtgagtggtcaaggtcagacgct
acgcacggacggttcaagattattcagggctggctgcattcgctggtccacaacactaag
ctgcacttgcagaatatacagctggtagagggcaatagggtcaaacagccccagagaggt
ggcccctcaatggacagaaagaaaagatttaggaggagagagccagcgtctgagctaaag
ggcaagctgagagcaagtctggacagagatgcagagtatgttagggagatgagacgccat
gttgcggagtaccctaacgcccgagtggtcctcaacatgcggagcgggagctgggcgctt
aaactgcctttcattcaagaggtggtgggaccttccttgaggacaatctacttggtgaga
gaccctcgagcatggatttatctcatggtttataacagcaaacccagcctttactctctt
aaaaacatccctcagcacctttccttgatattcaaggaggatgctgtgagtgacaggtgc
ccatcttctgcgccagagtttaaaataatccagaggctcctgtcccgttctgagacaaac
cccatcctgatactggctcatctgtggctggctcacaccgcagcgctgctgagagtcagc
gagagcctccccgaggagtccttcctccaagtgaggtttgaggacgtggtcaacttcccg
caggagacggcggagagcatacacacatttctgggggtgcccgtgtcacccgcagccctc
aaccagcttatcttcaccacctccacgaacctttacaatctcatttatgagggggacatt
tcaccagccaacataaacatgtggagacagaatatgcctcggaaggacatgagactcata
gaagatgtgtgtgggactgtgatgaggaggctgggttacaccaggtttgcaaattaa
DBGET
integrated database retrieval system
