Trematomus bernacchii (emerald rockcod): 117498970
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Entry
117498970 CDS
T09643
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
117498970 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tben03400
]
117498970 (lig4)
Enzymes [BR:
tben01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117498970 (lig4)
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
117498970 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
BRCT
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
117498970
NCBI-ProteinID:
XP_034007078
LinkDB
All DBs
Position
Unknown
AA seq
910 aa
AA seq
DB search
MEGSSKSDAAAQPSVAAQVPFLHLCSTLEKIQKTKLRPDKSKTLGDFIESWRKFHSALHK
DNPKSTDSFYSSMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TASQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKGLVKKSLLHII
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDASELYNVNTDLNKVCQQLHNPSMSL
SDVSIGLFSAFKPMLAGVANIRNVEKQMGNSPFFIQTKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGASPLEGSLTPYIHNVFKSHVVNCILDGEMMAYNPTTDIFMQKGSKFDIKKLM
EDSELQTCFCVFDVLLVNDQKLGKETLKKRHETLQTVFTPVKGRIHLVPKADARTVQDVV
NALNDAIDSREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGK
RGGMMSHFLAAVAEAPKPGEKPSVFHSFCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
ASILCGTEKPEVYIEPCNSVILQVRAAEIVGSDMYKTNCTLRFPRIEKIRDDKEWHQCMT
LAELDQFRGKASGKLASRHLFIDGNEPQKKKRKPLVKPKKVVGIIDQFKHQDLSGVTKET
DMFEDVEFCILNGTEQHPKAELEKGVARCGGIVVQNPGRDTYCVVAGVENMRVKNLVLSD
QHDVVWAAWLLECLDQKEVVPWQPRHMIHMSPSTREHFAKEYDSYGDSYFVDTDEQQLRE
VFARISNEDTSAAVNISQVEQRYSWEDIPTSMFRPFEVYMDRFTDIGEPGTAIQASCLDI
RALEFRYHGGKVLKKLEEGVSHVIISEETRLLHLRTLRRCFRKKFKIVRESWLTDSIKAG
YLLNDTDYLA
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggagggatcttctaaaagtgatgcagctgctcagccctctgtcgctgctcaagttcct
ttccttcatctttgctccaccttagagaaaatccagaagacaaaactccgcccagataaa
tccaagacccttggggatttcattgagtcatggaggaagtttcattctgccctccacaaa
gacaaccccaaatcaacagactctttctactcatctatgcgcctcatagtcccttccttt
gaacgagagcgcatggcttacggcatcaaagagagcatgttagctaaactttatattgac
gtcttaggcctcccaaagaatggcccagaagccaataaacttttgaactaccgtgctccg
actgcatcccaaggagaagctggagactttgccggcatggcgtactttgtgctgaagaaa
cgctgcaccagccaaggaaatctaagcatcaaagaagtaaacgactttctggattcggta
gcaatcaacaacgctagcaagcagaaaggtcttgtgaaaaagagtctgctgcacatcatc
acccagagctcggctctcgagcagaagtggctcatcagaatgattctgaaagacatgaag
ctcgggatcagcaaagaaactgttcttcaagtcttccacccggatgctagcgagctctat
aacgtcaacacggacttaaacaaagtctgccagcagctccacaacccctccatgtcttta
agcgatgtctctatcggactcttctccgcattcaagcctatgttggcgggtgtggcgaac
atccgcaatgtggagaaacagatgggaaacagcccatttttcattcaaactaaactggat
ggagagcgtatacagcttcacaaagacggcgacgtgtacaagtacttcagtcgaaacgct
tttgagtacacccagcagtttggagcatctccactggaaggctcgctgacgccttacatc
cacaacgtttttaaaagccacgttgtaaactgcatcctcgacggggagatgatggcgtac
aacccgaccacggacatcttcatgcagaaagggagcaaattcgacatcaagaagctaatg
gaggactctgagctacagacgtgcttctgtgtgtttgacgtgctgttagtcaatgaccag
aagcttggcaaggaaacactaaagaagcgccacgagacccttcaaaccgttttcactcca
gtcaaggggaggatacatctggtaccaaaggccgatgccagaaccgtgcaggacgtggtg
aacgccctcaatgacgccattgacagcagagaagaggggatcatggtgaaggatcctttg
tccatctacaaacctgacaagcgaggagagggatggctgaaaataaagccagaatatgtg
gatggcttgatggatgagcttgacctgctgattgttggcggatactgggggaaaggaaaa
cggggcggtatgatgtcccatttcttagctgccgtcgccgaagctccaaagcctggcgag
aaaccctcagttttccactctttctgccgcatcggctctggctacaccatgaaggagttg
tacgacctcggtttaaagctagccaagcattggaaagtctatcggaaaaacgacccgcca
gcatccatcttgtgtggaaccgagaaaccagaagtctacatcgaaccctgcaactcggtc
atcctccaggtgagagcggcggaaatagtgggcagcgacatgtataaaaccaactgcacc
ctgcgcttccccaggatcgagaagatccgcgacgacaaggagtggcaccagtgcatgaca
ctcgcagagctggaccagttccgcgggaaggcctctgggaaactagcctcgcggcacctc
ttcatcgatggcaacgaaccgcagaagaagaagcgcaagccgctggtcaaacccaagaag
gtggtcgggatcatcgaccagttcaagcaccaggacctctccggggttaccaaggagacg
gatatgttcgaggatgtcgagttctgtatcctgaatggcactgagcagcaccccaaagcg
gagctggaaaagggcgtggccaggtgtggtggtatcgtggttcaaaacccaggacgggac
acctactgcgtggttgccggcgtggagaacatgcgagtgaagaacctggttttgtccgac
cagcatgacgttgtgtgggccgcctggctgctggagtgcctggaccagaaggaagtggtc
ccatggcaaccgcggcacatgatccacatgtcgccctccaccagggagcacttcgccaag
gagtacgacagctacggcgacagctacttcgtggacacggacgagcagcagctgcgggag
gtgtttgcacgaatcagcaacgaggacacgtcagcggcggtgaacatcagccaggtggag
cagcgctacagctgggaggacattcccaccagcatgttcaggccatttgaggtctacatg
gacagattcaccgacattggagaacctggaaccgccatacaagcttcctgtttggacatc
agggcgctggagtttcgctaccatggaggtaaggtgctgaagaagttggaggaaggagtc
tctcatgtcattatctcagaggaaaccagactactgcacttaaggactctgaggcgctgc
tttaggaagaagtttaagatcgtaagagaatcatggttgactgattcaataaaagcaggc
tatctgctgaatgacactgactacttggcttaa
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