Trueperella bernardiae: QPC17_06435
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Entry
QPC17_06435 CDS
T09150
Name
(GenBank) helix-hairpin-helix domain-containing protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tber
Trueperella bernardiae
Pathway
tber03030
DNA replication
tber03410
Base excision repair
tber03420
Nucleotide excision repair
tber03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tber00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QPC17_06435
03410 Base excision repair
QPC17_06435
03420 Nucleotide excision repair
QPC17_06435
03430 Mismatch repair
QPC17_06435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tber03032
]
QPC17_06435
03400 DNA repair and recombination proteins [BR:
tber03400
]
QPC17_06435
Enzymes [BR:
tber01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QPC17_06435
DNA replication proteins [BR:
tber03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QPC17_06435
DNA repair and recombination proteins [BR:
tber03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QPC17_06435
NER (nucleotide excision repair)
GGR (global genome repair) factors
QPC17_06435
MMR (mismatch excision repair)
DNA ligase
QPC17_06435
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QPC17_06435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WIM07382
LinkDB
All DBs
Position
complement(1381437..1384088)
Genome browser
AA seq
883 aa
AA seq
DB search
MNIEEATTRWNELAPKLRRAQEAYHSTGEPIMVDATYDSLIAQMRALEDRFPQLWSPQSP
TMKVGAKVARGAVAELRHAERMYSLQDVFSREELATWFAGITGELPEGSRFTAEVKIDGL
ALNLTYRGGVLETAATRGDGVTGEDVTRNALAIQAIPARLSGEEWPELVEVRGEVYFPIA
KFTEFNDLVEARNEEVARRNQEIDAYNKALRAKNAGRAKEGLAPLPRLQREGLLKTFVNP
RNAAAGTMRQEDNTGFAIKSLSFIAHGIGALEGASEALQEKMATQEGVYEVFRAWGLPVS
GQTRMVSTLAEIEDYLDEFQGARASLDHEFDGVVIKLEDRRVQAQLGYTARVPRWAVAYK
FPPTEVQTRLLDIQVQVGRTGRVTPFAVMEPVWVDGSTVAQATLHNPFEVERKGVMIGDV
VILRKAGDIIPEVVGPVLAERDGSERAFVMPTHCPACGGKIAPAKEGDKDLRCTNTRSCP
AQLHQRVIHIGSRGALDIESLGEESAQWLADPDRYRADVLIALATGHAIELTDEEALAAH
EAGWPLEDAADPRVRIVLTLEQRVELGITNEDGALLDPEGVIGEELQRELGIPTAQKPFL
DTEAQLFALTAAGLEGVRTWLPIRLAGEHTGDWRYVRAGWTKPAWSRTGRAGEAGAGRAA
EGAAPEGAARAGFEVKTISAPSKTLEKVLAEIEKAKTKELWRKLVALNIRHVGPVASRAL
AAHFGSLEAMLASGRAQVEAGEAPFSEIDGVGEIIGRSLLDWFEEPWHCEIVDAWRAAGV
TFEDERPAGGTGTDGAEGADGVVRPFEGMTIVVTGAVEGFTRDGVAEAIMKAGGKATGSV
SKKTTVVVIGENPGASKTTKAEALGIETWSAEEFLRRLGRADG
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
gtgaatatcgaagaagcaacaacacgctggaatgagctggcgcccaagctgcgccgcgcg
caggaggcctaccattcgacgggcgagccgatcatggtggacgccacgtatgactcgctg
attgcgcagatgcgcgcgctcgaggatcgcttcccacagctgtggagcccgcagtcgccc
acgatgaaggtgggggcgaaggtggcgcgcggggcggtggccgagctgcgccatgccgag
cgcatgtactcgctacaggacgtgttcagccgcgaggagctggccacgtggtttgccggg
atcacgggcgaactgccggaagggagtcggtttacggccgaggtgaagatcgacgggctg
gcgctcaacctgacgtaccgcggcggcgtgctggagaccgcggccacgcgcggggacggg
gtgacgggcgaggacgtgacgcgcaacgcgctcgcgatccaggcgatccccgcgcggctt
tcgggggaggagtggccggaactggtggaggtgcgcggggaggtctacttcccgatcgcg
aagttcaccgaattcaacgatctggtggaggcgcgcaacgaggaggtggcgcggcgcaac
caggagatcgatgcctataacaaggcgctgcgtgccaagaacgccggccgggcgaaggag
gggctggcgccgctaccgcgcctgcagcgcgaggggctactcaagacgttcgtcaacccg
cgcaacgcggcggctggaacgatgcgccaggaagacaacacgggcttcgcgatcaaatcg
ctgagtttcatcgcccacgggatcggggctctcgagggcgcctcggaggcactgcaggaa
aagatggccacccaggagggcgtctatgaggtgttccgggcgtgggggctgcccgtgtcg
gggcagacgcggatggtgtccactctggcggagattgaggattacctcgatgagtttcag
ggggcgcgggcgtcgctcgatcacgagtttgacggcgtggtcatcaagctggaggaccgg
cgcgtgcaggcacagcttggctacacggcgcgcgtgccgcgctgggcggtggcctacaag
ttcccgcccaccgaggtccagacccggctgctcgatatccaggtgcaggtgggccgcacg
gggcgcgtcacgccgttcgcggtgatggagccggtgtgggtggacggctccacggtggcc
caagccaccttgcacaacccattcgaggtggagcgtaagggcgtgatgatcggcgacgtg
gtgatcttacgcaaggcgggcgacatcatccccgaggtggtgggcccggtgctggcggaa
cgggacggttcggagcgtgccttcgtcatgcccacgcactgccccgcgtgcgggggcaag
atcgcgccggcgaaagagggggataaggacctgcggtgtacgaacacgcgctcgtgcccc
gcgcagttgcaccagcgggtgatccacatcggctcgcgcggtgcgctcgacatcgaatcg
ctgggggaggagtccgcgcagtggctggccgatccggaccgttaccgggccgacgtgctg
atcgcgctcgccaccgggcacgcgattgagctcacggatgaggaggcgctcgccgcgcat
gaggccggctggccgctggaggacgcggccgacccgcgcgtgcggatcgtgcttacgctt
gagcagcgggtggagctgggaatcacgaatgaggacggggcgctgctcgacccggagggc
gtgattggggaggagctccagcgcgagctcgggatccccacagcacagaagcccttcctt
gacaccgaggcgcagctgttcgccctcacggccgcgggcctggagggtgtgcgaacatgg
ctaccgattcggcttgccggcgagcacacgggtgactggcgctacgtgagggccggctgg
accaagccggcgtggtcgcggaccgggcgcgcgggcgaggcgggtgcgggcagagccgcg
gagggggccgcgccggagggtgccgcgcgggcgggcttcgaggtgaagacgatctcggca
ccgtcgaagacgttggagaaggtgctcgccgaaatcgagaaggcaaagacgaaggagctg
tggcgcaagctcgtggcgctcaacatccgccacgtggggccggtggcctcacgggcgctc
gcggcccacttcggctcgctggaggcgatgctggcctcagggcgcgcccaggtggaggcg
ggggaggcgcccttctccgagatcgacggggtgggcgagatcatcggccgctcgctgctc
gactggttcgaggaaccctggcattgcgagatcgtggacgcctggcgggcggccggggtc
acttttgaggacgagcgcccggccggtgggaccggcacggatggtgcggagggcgcggac
ggcgtcgtgcggccgttcgagggcatgacgatcgtggtgaccggcgcggtggaaggcttc
acgcgtgacggggtggccgaggcgatcatgaaggcgggtggtaaggccaccggctcggtg
tcgaagaagaccaccgtggtggtgatcggggaaaacccgggcgcgtcgaagactacgaag
gcggaggcgctcggcattgagacctggagcgcggaggagttcctgcgcaggctcggccgg
gcggacggctag
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