Tepidiforma bonchosmolovskayae: Tbon_09970
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Entry
Tbon_09970 CDS
T06308
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tbh
Tepidiforma bonchosmolovskayae
Pathway
tbh03030
DNA replication
tbh03410
Base excision repair
tbh03420
Nucleotide excision repair
tbh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tbh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Tbon_09970 (ligA)
03410 Base excision repair
Tbon_09970 (ligA)
03420 Nucleotide excision repair
Tbon_09970 (ligA)
03430 Mismatch repair
Tbon_09970 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tbh03032
]
Tbon_09970 (ligA)
03400 DNA repair and recombination proteins [BR:
tbh03400
]
Tbon_09970 (ligA)
Enzymes [BR:
tbh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Tbon_09970 (ligA)
DNA replication proteins [BR:
tbh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Tbon_09970 (ligA)
DNA repair and recombination proteins [BR:
tbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Tbon_09970 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Tbon_09970 (ligA)
MMR (mismatch excision repair)
DNA ligase
Tbon_09970 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Tbon_09970 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
UPF0758_N
PTCB-BRCT
Auto_anti-p27
HHH_8
Motif
Other DBs
NCBI-ProteinID:
QFG03611
UniProt:
A0ABX6C386
LinkDB
All DBs
Position
complement(1975802..1977874)
Genome browser
AA seq
690 aa
AA seq
DB search
MRPVPKTQYEARLRSEELRSLINYHNRLYYELNQPEIPDEVYDDLMNELRAIEAAYPELI
TPDSPTQRVGGAPLPTFEVVEHRIPLLSLSNCFSEEELRAWHRRAAERLGMERFALVSEP
KIDGLAIALVYERGRFVQGATRGDGYHGENVTENLRTIPTIPKQLQGSYPERFEVRGEVY
MPRSGFEELNAAIGEENLRREQEGKKPLPMYANPRNAAAGAVRQKDPAVTASRPLAMFVY
QLGWCEGPHPQSHFEILGWLREMGFNVNPEARLHPDLEDVFPRIDWWGRERERLDYDIDG
VVIKVDDTQAWERLGAVGREPRWATAFKFPPQQRTTKLLDIQVNVGRTGVLTPFAVLEPV
VVGGARVSLATLHNEGDIRRKDIRIGDTVIVQRAGEVIPQVVGPVVQLRTGEEREFVMPD
RCPACGTPVSRDPDQAAVYCPNAACPAQQIRLIEHFASRSAMDIEGLGEKMAVQLYQSGL
VRNVADLYSLTKEQLLRLEKVQEKTAENLLRGIAASKSRPLPNVLFALGIRHVGMETARL
LAEHIGSLDRLLDVKAEELQQIEGIGPVVAASIENWVQRPENRAIVERLVAAGVNPRFER
PAAGAGPLEGLTIVVTGRLERMSRAEAEDAIRARGGKVGSSVTKGTDFLVVGADAGSKLA
KAEKLGTRLLTEEEFLALLERGPAALSQAS
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccggtgccgaagacccagtacgaagcgcggctgcggagcgaagagctgcggtcg
ctcatcaactaccacaaccgcctctactacgagctgaaccagcctgagatcccggacgag
gtctacgacgacctgatgaacgagctccgggcgatcgaagcggcgtacccggagctgatt
acgccggattcgccgacgcagcgggtcggcggcgcgccgctgccgacgttcgaggtagtc
gagcaccgcatcccgctgttgagcctttcgaactgcttcagcgaggaggagctgcgggcg
tggcaccggcgggcggcggagcggctggggatggaacggttcgcactggtgtcggagccg
aagatcgacgggctggcgattgcgctggtgtacgagcgcgggcggttcgtgcagggcgcc
acgcggggcgacggctaccacggcgagaacgtgaccgagaacctgcggacgatcccgacg
attccgaagcagctgcagggaagctacccggagcggttcgaggtgcgcggcgaggtctac
atgccgcggagcggctttgaggagctgaacgcggcgatcggcgaggagaacctccggcgg
gaacaggaagggaagaagccgctgccgatgtacgcgaatccgcggaacgcggcggcggga
gccgtgcggcagaaggaccctgcggtgacggcgtcgcggccgctggcgatgttcgtctac
cagctcggctggtgcgagggtccgcacccgcagagccacttcgaaatcctgggctggctc
agggagatggggttcaacgtcaaccccgaagcgcggctccacccggacctggaggacgtt
ttcccgcggatcgactggtggggccgcgagcgggagcggctggactacgacatcgacggc
gtggtcatcaaggttgacgacacgcaggcgtgggagcggctcggcgcggtgggccgcgag
ccgcgctgggcgacggcgttcaagttcccgccgcagcagcggacgacgaagctgctggac
atccaggtgaacgtcgggaggaccggcgtgctgacgccgttcgccgtgctggagccggtg
gtggtcggcggggcgcgggtctcgctcgcgacgctgcacaacgagggggacatccggcgg
aaggacatccgcatcggcgacacggtgatcgtgcagcgcgcgggtgaggtaattccgcag
gtggtcgggccggtggtgcagctgcggacgggcgaagagcgggagttcgtgatgccggac
cggtgcccggcgtgcgggacgcccgtttcgcgggacccggaccaggcggcggtctactgt
ccgaacgcggcctgcccggcgcagcagatccggctcatcgagcatttcgcgagccggtcg
gcgatggatatcgaagggctgggggagaagatggcggtccagctgtaccagagcgggctg
gtgcggaacgtggccgacctgtactcgctgacaaaggagcagctgctccgcctggagaag
gtgcaggagaaaaccgccgagaacctgctgcgcggcatcgcggcgagcaagagccggccg
ctgccgaacgtgcttttcgcgctgggcatccgccatgtggggatggagacggcccggctg
ctggccgagcacatcggcagcctcgaccggctgctcgacgtgaaggcggaggagctccag
cagatcgaggggatcggcccggtggtcgccgcgagcatcgagaactgggtgcagcggccg
gagaaccgggcgattgtcgagcggctggtcgcggcgggggtgaacccgcggttcgagcga
ccggcggcgggcgcggggccgctggaggggctgacgattgtggtgaccggccggctggag
cggatgagccgcgccgaggccgaggacgcgatccgggcgcgcggcgggaaggtgggaagc
tcagtgacgaaggggaccgacttcctggtcgttggggcggatgccggctcgaagctggcg
aaagcggagaagctggggacacggctgctgacggaggaggagttcctggcgctgctggag
cgggggccggcggcgctttcgcaggcttcgtga
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