Thermoanaerobacter brockii: Thebr_1735
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Entry
Thebr_1735 CDS
T01409
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tbo
Thermoanaerobacter brockii
Pathway
tbo03030
DNA replication
tbo03410
Base excision repair
tbo03420
Nucleotide excision repair
tbo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Thebr_1735
03410 Base excision repair
Thebr_1735
03420 Nucleotide excision repair
Thebr_1735
03430 Mismatch repair
Thebr_1735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tbo03032
]
Thebr_1735
03400 DNA repair and recombination proteins [BR:
tbo03400
]
Thebr_1735
Enzymes [BR:
tbo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Thebr_1735
DNA replication proteins [BR:
tbo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Thebr_1735
DNA repair and recombination proteins [BR:
tbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Thebr_1735
NER (nucleotide excision repair)
GGR (global genome repair) factors
Thebr_1735
MMR (mismatch excision repair)
DNA ligase
Thebr_1735
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Thebr_1735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
RNA_ligase
PTCB-BRCT
BRCT_2
HHH_8
HHH_3
Cdd1
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
ADV80272
UniProt:
E8UVM0
LinkDB
All DBs
Position
complement(1722298..1724286)
Genome browser
AA seq
662 aa
AA seq
DB search
MDPKERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPELKTPDSPSQR
VGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRVREAVGDVEYVVELKIDGLSVELI
YEKGIFTVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDVSLVVRGEVFMPRASFEKLNEE
REKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTHIETLEFLNE
QGFKIIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREILGQTAKDPR
WAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVAISGSVVSRATLHNEDYIKEKD
IRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRCPECGALAVRLLGEAIRRCTG
LNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLSKGLIHNIADLYYLKYEDLIQLERMG
DKSVKNLLNAIEESKTRDLDRLLFGLGINLIGSKAAQVIAEHFKTMDNIMKAKFEDFTQL
PDIGPKMARSIVSFFAEKQNVEIIEKLKNAGVNMKKIPKEKVNNIFEGKTFVLTGALGNY
TREEATRIIEERGGKVTNSVSKKTDYVLVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGE
NI
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggatccaaaagaaaggataaaggaattgagagaaaaaataaattatcacaattacaga
tattacgttttggaccaaccagagatttcagactatgagtacgacatgctgatgagagaa
cttatagaattagaagaaaaatatccagagcttaaaactccagactctccatcccaaaga
gtaggtggggagcctttaaaagaatttgagccttttacccatgtagttccaatgttaagt
ttggctaatgctttttctgagggagaacttagagactttgacagaagagtaagagaggca
gtgggagatgtagagtacgtagtagaattaaaaattgacggcttatctgtggaactaatt
tatgaaaaaggcatatttactgtgggttctacaagaggagacgggatcgtaggagaaaat
gtcacacaaaatttaaagactataaagtcaattcctttaaggcttaaggatgatgtaagc
cttgttgtaagaggagaggtcttcatgccccgcgcttcttttgaaaaattaaatgaggag
agagaaaaattaggggaaagcctttttgcaaatcccagaaatgctgcagcaggttcttta
aggcaattagatcctaaagtgacggcgaaaagagatttagacatttttatttttaacctt
cagaagattgagggtagaaaatttaaaacccacatagagacattagaatttttgaatgaa
cagggatttaaaataataccaattcataaaaaatgtagcaatatagatgaagtaataaaa
gaaatagaagagataagaaacttacgagataagctgccttacgacattgatggagcagtt
gtaaaagtaaatgaccttgaaaagagagaaattttaggccagactgccaaagaccccagg
tgggctattgcttttaaatatcctgcagagaggaaaaagacaaaagtcttggatataata
gttcaagtaggaaggactggagcccttactcctacagctatattagagcctgtagctatt
tcaggttcagttgtaagccgagctacacttcacaatgaggactacataaaagagaaagac
ataaggataggagacacggtaatagttcaaaaagcgggagaaatcattcctgaagtagta
gaagtggtaaaagaagagaggactggacaagaaagagaatttgtaatgccagatagatgc
cctgaatgcggtgctttagctgtcaggcttctgggtgaggctataaggcgttgcacaggt
ctaaattgtcctgcacagcttctaagaggcattatccactttgcttcaaaagatgcaatg
gatatagaaggattggggccagctataataaatcagcttttgtcaaaaggtctaattcac
aacatagcagatttgtattatcttaaatacgaagatttaatacaattagaaagaatgggg
gacaaatctgttaaaaatttattaaatgctattgaagaaagcaaaacaagagatttagat
agattgctctttggcttgggtataaacttaataggcagtaaagctgcccaagtgattgct
gagcattttaagacaatggacaatatcatgaaggcaaaatttgaagactttacacagttg
cctgacataggacctaagatggcaagaagcatagtttccttttttgcagaaaaacaaaat
gtagagataattgaaaaacttaaaaatgctggagtaaacatgaaaaaaattccaaaagaa
aaagtaaacaacatatttgaagggaaaacttttgttttgacaggagcgttgggaaattac
acgagagaagaagctaccaggataattgaagaaagaggtggaaaagttacaaattcagta
agtaaaaaaacagactatgtattagtaggtaaagatcctggctctaaacttaaaaaagcc
caagaattaggaataaagataattgatgaaaaacaatttgaagaaatgctaaaaggtgaa
aatatttaa
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