Tenericutes bacterium MZ-XQ: BK011_00280
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Entry
BK011_00280 CDS
T05490
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tbz
Tenericutes bacterium MZ-XQ
Pathway
tbz03030
DNA replication
tbz03410
Base excision repair
tbz03420
Nucleotide excision repair
tbz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tbz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BK011_00280 (ligA)
03410 Base excision repair
BK011_00280 (ligA)
03420 Nucleotide excision repair
BK011_00280 (ligA)
03430 Mismatch repair
BK011_00280 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tbz03032
]
BK011_00280 (ligA)
03400 DNA repair and recombination proteins [BR:
tbz03400
]
BK011_00280 (ligA)
Enzymes [BR:
tbz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BK011_00280 (ligA)
DNA replication proteins [BR:
tbz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BK011_00280 (ligA)
DNA repair and recombination proteins [BR:
tbz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BK011_00280 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BK011_00280 (ligA)
MMR (mismatch excision repair)
DNA ligase
BK011_00280 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BK011_00280 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
PTCB-BRCT
Zn_ribbon_6
Zn_ribbon_RlmA
Motif
Other DBs
NCBI-ProteinID:
AUD64204
UniProt:
A0A2K9ASR7
LinkDB
All DBs
Position
59914..61893
Genome browser
AA seq
659 aa
AA seq
DB search
MNYKQRIEELTQIINQANYDYHTLDQPTITDYEYDQLLKELVDLENKYPEYKLENSPTDK
VGGVVLDSFEKVTHQIPMMSLSNVFDEEELSAFDERIRKVTDQYTYLSELKIDGLAVSIR
YENGKFVRAATRGNGQVGEDISENVKTIKSLPLTLNENIDIEVRGEIFMPHKSFNKLNEE
RMEQDLPLFANPRNAAAGTIRQLDSKVAAKRNLDIFLYQIVRAEDYVSTQAEALELLKKL
GFKVNENYKLNQNLKELIDQIHKYDDLRKKLNYETDGVVIKINEFDLHESIGYTAKYPKW
ATAYKFKAEQQTTLLKDITFQIGRTGVVTPVAELEPVFISGSKVSRATLHNEDYIKAKDI
RINDMVIVHKAGEIIPEVVEVDMTSRKEQKPFEMIDTCPVCHEPLERKTGEADYFCTNDG
CPGKHINSLIHFSSRVAMDIDTLGEKVVETLHELGFLNTIADIYTLKNHENDLKGLPGFA
DKKVEKLLNAIEDSKKQSFDKLIFGLGIKHVGAKVAKVLVSNYPSMEQLKSATYDDLINI
NEIGEMIAQSIVNYFEKPENIELICKLESYGLNMSYETTKVMDHEFNGKTFVLTGKLENY
TRDEAQDIIEKLGGKVSSSVSKKTDYVLAGSDAGSKLQKAKDLEVTVLDEAAFKVKING
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaattataaacaaaggattgaagaactaactcaaataattaatcaggcaaattatgat
tatcatactttagatcaacctaccataactgactatgagtatgatcagcttttaaaagaa
ttagttgatttagaaaataagtatccagaatataaattagaaaactctccaacagataaa
gttggcggagttgttttagatagttttgaaaaagtgacacatcaaatacctatgatgagt
ttatcaaatgtttttgatgaagaagaactgagtgcatttgatgaacgcattcgtaaagtc
acggatcaatacacgtatctttctgagttaaaaattgacgggctagcagtaagtatccgc
tatgagaatggcaagttcgtaagagctgcaactagaggtaatgggcaagttggagaagat
atttctgaaaatgttaaaaccattaagagcttacctttaacattaaatgaaaatattgat
attgaggttcgtggtgaaattttcatgccacacaagagtttcaataaacttaatgaagaa
cgtatggaacaagatctaccactatttgcaaatccaagaaatgcagctgcaggaacaatc
agacagttagattctaaagtcgctgcaaaaagaaatttagatattttcctatatcaaatt
gttagagctgaagattatgtgagtacccaagcagaagcactagagctattaaaaaaactt
ggattcaaagttaatgaaaattataaactcaatcaaaacttgaaagaacttatcgatcaa
atacataagtatgatgatcttagaaaaaaactaaattatgaaactgatggagtcgttatt
aagattaatgagttcgatttacacgaaagtattggatatactgcaaaatatccaaagtgg
gcgacagcatataagtttaaagcagaacaacaaacaactttgttaaaagacattactttt
caaattggtagaacaggtgttgttacaccggttgctgaattagaaccagtttttatttcg
ggatctaaagtatctcgtgcgacacttcataatgaagactacatcaaagcaaaagatatc
agaatcaatgacatggtgattgtccataaggcaggagaaatcatacctgaagttgttgaa
gttgacatgacatcaaggaaagagcaaaaaccttttgagatgatcgatacttgtcctgtt
tgtcatgaaccattagaaagaaaaacaggagaagcggattacttttgtacaaatgatggg
tgtcccggaaagcatatcaacagtctgattcatttctcatcgagagtagcgatggatatt
gatacacttggtgaaaaagttgtagaaacattacatgagttagggtttctaaatacaatt
gcagatatttacacacttaagaatcacgaaaatgatcttaaaggtcttcctggttttgca
gataaaaaagttgaaaagctattaaatgcaattgaagatagtaagaagcaaagttttgac
aaacttatttttgggctgggcatcaaacatgttggtgcaaaagtagctaaagtattagtt
tcaaattatccgtctatggaacaacttaaatcagcaacttatgatgatttgatcaacatc
aatgagattggtgaaatgattgcacagtcaatcgttaattattttgaaaaaccagagaac
atagaactcatttgcaaattagaatcgtatggactaaacatgtcttatgaaaccacaaaa
gtaatggaccatgagtttaatggtaaaacatttgtattaacaggtaaattagaaaattac
acaagagatgaagctcaagacattattgaaaagttaggtggcaaggtgagctcatcggtc
agcaagaaaacagattatgttttagcaggaagcgatgctggatcaaaactacaaaaggct
aaagatttagaggtcactgtacttgatgaagcagcatttaaggtgaaaattaatggatga
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