Tribolium castaneum (red flour beetle): 661338
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Entry
661338 CDS
T01046
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
tca
Tribolium castaneum (red flour beetle)
Pathway
tca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
661338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tca03041
]
661338
Spliceosome [BR:
tca03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
661338
Complex C
U5 SnRNP specific factors
661338
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
Dynamin_N
Roc
Ras
Motif
Other DBs
NCBI-GeneID:
661338
NCBI-ProteinID:
XP_008196162
UniProt:
D6WUJ3
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All DBs
Position
LG8:complement(2922884..2933763)
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AA seq
970 aa
AA seq
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MDADLYDEFGNYIGPELDSDDDEDEEPEPQEDEEQQDYDDEQMDESEPQPMAIVLHEDKQ
YYPSALQVYGPDVETIVQEEDAQPLDVPLIEPVKKKKFQLKEQDLPDTTYNMEFLADMMD
NTSLIRNVALIGHLHHGKTTFVDCLIRQTHPGYQDYEEKNLRYTDTLFTEQERGCSIKSI
PITLLLQDVKNKSYLMNIFDTPGHVNFSDEVTAAMRLCDGVVLFIDAAEGVMLNTERLLK
HAVQEQMQITICINKIDRLILELKLPPQDAYYKLRHIVEEINGLLTLYSDDANPHIVSPV
LGNVCFASSQYGVCFTLKSFANLYNLCYGEVNVEEFSKRLWGDIYFNSKTRKFTKKAPHN
SAQRSFVEFILEPLYKVFAQVVGDVDTTLLDVLDELGIKLTKNEMKLNIRPLLRLVCNKF
LGDFNGFVNMCVEHINSPLDNAKRKIDHIYTGPNTSKIYDDMVNCDQDGLLMVHSSKMYP
TDECTSFQVLGRVMSGTLHAGTDVRILGENYTLQDEEDSRVLTIGRLWIYESRYKIELNR
VPAGNWVLIEGIDQSIVKTATITDLTIYEDLYIFRPLKFNTQSIIKIAVEPVNPSELPKM
LDGLRKVNKSYPLLTTRVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFC
ETVVETSSLKCFAETPNKKNKLTMIAEPLEKGLAEDIENENVQIAWNKKKLGEFFQTKYD
WDLLAARSIWAFGPDNTGPNILVDDTLPSEVDKGLLSSVKDSIVQGFQWGTREGPLCEEP
IRNTKFKILDAVIANEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYLFVEVQAPADCV
SAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHH
WQIVPGDPLDKSIVIRPLEPQPATHLAREFMIKTRRRKGLSQDVSINKFFDDPMLLELAR
QDVMLNYPLL
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggatttgtacgacgagttcggtaattacatcgggcctgagctggacagcgat
gacgacgaggacgaggagcccgagccccaggaagacgaggagcagcaagactacgatgac
gagcaaatggacgagagtgagccccaacccatggccattgtcttgcacgaggacaagcaa
tactacccgtctgctttacaagtctatgggcctgatgtggagactattgtgcaagaggag
gacgcgcagccccttgacgtgcctttgatcgaaccggtgaagaaaaagaagtttcagttg
aaggagcaggatttgcccgatacgacgtacaatatggagtttttggccgatatgatggac
aatacgtcgctgatacgtaacgtggccttgattgggcacttacatcatggtaaaaccacg
tttgttgattgtttgattcggcaaacgcatccagggtatcaggactatgaagagaaaaat
ttgagatataccgacactttgttcacggagcaggaaaggggctgctcgatcaagtcgatc
ccaattacgctacttttgcaggacgttaagaacaagagttacctaatgaacatttttgac
actcctggtcatgtgaatttttccgacgaagtgaccgcagcgatgcgactttgcgacggc
gttgtgttattcatagacgccgccgaaggcgtaatgttaaacaccgaacgtttactaaaa
catgccgttcaagaacaaatgcaaatcacaatttgtatcaacaaaattgatcgcttgatc
cttgaattaaagttacccccacaggacgcctactacaagttgagacacatcgtggaagaa
ataaacggattattgacgctttactccgacgatgctaacccccatattgtctccccagtg
ctgggaaacgtgtgctttgccagctcgcaatatggggtttgcttcactttgaaatcgttc
gcaaatttgtataacttgtgctacggcgaagtgaacgtcgaggagttctcgaaacggctc
tggggcgacatttacttcaatagcaaaacgcgcaaatttacgaagaaggcgcctcacaat
tcggcccagcgcagcttcgtcgagttcatcctggagcccctttacaaagtcttcgcccaa
gtggtgggcgacgtggacaccaccctactagatgttttagacgagctaggaatcaaactc
accaaaaacgagatgaagctcaatattcgcccccttttgcgtctcgtgtgcaacaaattc
ctgggggattttaacggttttgttaacatgtgtgtcgaacatatcaactcgccgttagat
aacgctaaaagaaaaatcgaccatatttacacggggccgaatacgagtaaaatttacgac
gatatggtcaattgtgaccaagatgggttgttgatggtacatagttcgaagatgtaccca
actgatgaatgcacctcgtttcaagtcttgggacgggttatgagtgggacgcttcatgcg
gggactgatgtgaggattttgggcgagaattacacgctgcaggatgaggaggattcgagg
gttttgaccatcgggaggctgtggatttatgagtccagatacaaaatcgagctaaaccgc
gtccctgccggcaattgggtcctaatcgagggcatcgaccaatcaatcgttaaaacagcc
acaatcacagacctcacaatctacgaggacttgtacattttccgcccccttaaattcaac
acccaaagcatcattaaaatcgccgtggagcccgtcaacccttcggaactcccgaaaatg
ctcgacgggctccgaaaggtcaacaaatcctaccccttgctgaccacaagggtggaggag
tcaggcgagcacgtggtgctcggcaccggggagttgtacctcgactgcgtcatgcacgac
ttgaggaaaatgtactcggaaatcgacattaaagtcgccgaccccgttgtcgccttttgc
gaaacggtggtcgaaacttccagtttaaaatgcttcgctgaaacgccaaacaagaaaaac
aaactgacaatgatcgcagagcctttggaaaagggcctcgccgaagacatcgaaaacgaa
aacgtgcaaatcgcttggaataagaaaaaactgggcgagtttttccaaactaaatacgac
tgggatttgctcgcagctcgcagcatttgggcgttcggccccgacaacacgggccccaac
atcctagtcgacgacacgctcccgtcggaagtcgacaaggggctgctcagctcggtcaaa
gactcgatcgtgcagggcttccagtggggcacccgcgaggggccgttgtgtgaggaacca
atccgcaacactaagttcaaaatcctggacgcggtgatcgccaatgagcccctccatcgg
ggcggaggccagatcatcccgacggcgcgccgtgtcgtctactcggccttcctgatggct
acgccccgcctcatggagccctacttgttcgtggaggtgcaagcccccgccgattgcgtc
tcagccgtgtacacggtcctggccaaacggcgagggcacgtcacgcaagacgcccccgtg
ccggggtccccactttacacaatcaaggcgtttataccggcgattgatagtttcgggttt
gagaccgacttgaggacgcatacgcaaggacaagcgttttgtttgtcggtgttccaccat
tggcagatcgtgccgggggacccccttgataagagcatagtgataaggcccttggagccc
caaccggccacgcatctggcacgcgagttcatgatcaagacaaggaggcgcaaggggctc
agtcaggatgtctcgattaataagtttttcgacgatccgatgttgctggagctggcgcgg
caagacgtcatgcttaattatccacttttgtaa
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